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L3_131_000M1_scaffold_100

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_100_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(243..560)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H7C0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49886.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_131_000M1_scaffold_100_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

791..1447
DNA (657bp) protein (219aa)
Response regulator receiver n=6 Tax=Bifidobacterium bifidum RepID=E3EQF9_BIFBS
response regulator
Response regulator receiver {ECO:0000313|EMBL:KFI43786.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_100_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1444..2724
DNA (1281bp) protein (427aa)
histidine-kinase (EC:2.7.13.3)
Putative histidine-kinase {ECO:0000313|EMBL:KFI43785.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFI43785.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Histidine kinase n=2 Tax=Bifidobacterium bifidum RepID=E3EQF8_BIFBS
L3_131_000M1_scaffold_100_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2912..3913
DNA (1002bp) protein (334aa)
HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJG9_BIFBI
lacR; HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:AFL05032.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_100_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3904..4251)
DNA (348bp) protein (116aa)
nagA; N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
NagA2 N-acetylglucosamine-6-phosphate deacetylase n=4 Tax=Bifidobacterium bifidum RepID=E4NYP2_BIFBP
NagA2 N-acetylglucosamine-6-phosphate deacetylase {ECO:0000313|EMBL:KFI43783.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_100_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4424..7582)
DNA (3159bp) protein (1053aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
lacZ6; beta-galactosidase (EC:3.2.1.23)
Beta galactosidase small chain n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHB9_BIFBI
L3_131_000M1_scaffold_100_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7948..9423
DNA (1476bp) protein (492aa)
Galactoside symporter n=6 Tax=Bifidobacterium RepID=E3EQF4_BIFBS
lacS; galactoside symporter
Galactoside symporter {ECO:0000313|EMBL:ADO53610.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_131_000M1_scaffold_100_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9827..10657
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CFQ3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43780.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
transcriptional regulator
L3_131_000M1_scaffold_100_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10743..11654)
DNA (912bp) protein (304aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
tRNA (m(7)G46) methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUB4_BIFBI
L3_131_000M1_scaffold_100_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11848..12861
DNA (1014bp) protein (338aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AID18670.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AID18670.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
GalE UDP-glucose 4-epimerase n=5 Tax=Bifidobacterium RepID=E4NYN7_BIFBP
L3_131_000M1_scaffold_100_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13156..13863
DNA (708bp) protein (236aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VBY1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51096.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_131_000M1_scaffold_100_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15233..16384
DNA (1152bp) protein (384aa)
fucO; lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase n=7 Tax=Bifidobacterium RepID=E3EQE6_BIFBS
L-1,2-propanediol oxidoreductase {ECO:0000313|EMBL:BAQ98657.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_131_000M1_scaffold_100_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16555..17454)
DNA (900bp) protein (300aa)
Glycosyltransferase, group 2 family protein n=4 Tax=Bifidobacterium bifidum RepID=U2DP74_BIFBI
putative glycosyl transferase
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERI83382.1}; Putative glycosyltransferase {ECO:0000313|EMBL:BAQ98656.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_131_000M1_scaffold_100_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17508..19112
DNA (1605bp) protein (535aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M2U9_BIFBI
Conserved hypothetical membrane protein {ECO:0000313|EMBL:AFL05019.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
hypothetical protein
L3_131_000M1_scaffold_100_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19112..20335
DNA (1224bp) protein (408aa)
N-acetylglucosaminyltransferase n=7 Tax=Bifidobacterium RepID=E3EQE3_BIFBS
pgaC; biofilm PGA synthesis N-glycosyl transferase
Biofilm PGA synthesis N-glycosyl transferase {ECO:0000313|EMBL:EKF16335.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_131_000M1_scaffold_100_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20476..21405
DNA (930bp) protein (310aa)
ABC transporter ATP-binding protein (EC:3.6.3.31)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43772.1}; EC=3.6.3.25 {ECO:0000313|EMBL:KFI43772.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ABC type transport system, ATP-binding protein n=7 Tax=Bifidobacterium bifidum RepID=E3EQE2_BIFBS
L3_131_000M1_scaffold_100_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21405..23060
DNA (1656bp) protein (552aa)
ABC-2 type transport system, permease protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQE1_BIFBS
ABC-2 type transport system, permease protein {ECO:0000313|EMBL:ADO53597.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
ABC transporter permease
L3_131_000M1_scaffold_100_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23167..24582
DNA (1416bp) protein (472aa)
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJF2_BIFBI
dacB; D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:AFL05015.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_100_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24595..25713
DNA (1119bp) protein (373aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
tilS; tRNA(Ile)-lysidine synthetase TilS (EC:2.4.2.8)
tRNA(Ile)-lysidine synthase n=2 Tax=Bifidobacterium RepID=R6GJX0_9BIFI
L3_131_000M1_scaffold_100_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25691..26257
DNA (567bp) protein (189aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFR51105.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFR51105.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hpt; hypoxanthine phosphoribosyl transferase (EC:2.4.2.8)
Hypoxanthine-guanine phosphoribosyltransferase n=8 Tax=Bifidobacterium RepID=E3EQD8_BIFBS
L3_131_000M1_scaffold_100_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26291..28357
DNA (2067bp) protein (689aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
ftsH; cell division protein FtsH (EC:3.6.1.3)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Bifidobacterium bifidum RepID=E3EQD7_BIFBS
L3_131_000M1_scaffold_100_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28498..29064
DNA (567bp) protein (189aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
GTP cyclohydrolase 1 n=8 Tax=Bifidobacterium RepID=E3EQD6_BIFBS
L3_131_000M1_scaffold_100_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29129..30001
DNA (873bp) protein (291aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Dihydropteroate synthase n=3 Tax=Bifidobacterium RepID=E3EQD5_BIFBS
folP; dihydropteroate synthase
L3_131_000M1_scaffold_100_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30085..31599
DNA (1515bp) protein (505aa)
sulD; dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=4 Tax=Bifidobacterium bifidum RepID=E3EQD4_BIFBS
Uncharacterized protein {ECO:0000313|EMBL:BAQ98645.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_131_000M1_scaffold_100_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31596..32135
DNA (540bp) protein (180aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4VBZ5_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI43763.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_100_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32640..33545)
DNA (906bp) protein (302aa)
tesB; acyl-CoA thioesterase (EC:3.1.2.27)
Acyl-CoA thioesterase n=4 Tax=Bifidobacterium RepID=K2HA86_BIFBI
Acyl-CoA thioesterase {ECO:0000313|EMBL:CDB21896.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_131_000M1_scaffold_100_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33930..37259
DNA (3330bp) protein (1110aa)
lacto-N-biosidase (EC:3.2.1.52)
Lacto-N-biosidase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYE5_BIFBP
Lacto-N-biosidase {ECO:0000313|EMBL:EKE50935.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_131_000M1_scaffold_100_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37459..39138)
DNA (1680bp) protein (560aa)
ABC transporter ATP-binding protein (EC:3.6.3.19)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=E4NYE4_BIFBP
ATPase component of ABC transporter {ECO:0000313|EMBL:AFL05004.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_100_29
Corynebacterium tuberculostearicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39510..40649)
DNA (1140bp) protein (380aa)
Transposase for insertion sequence n=17 Tax=Actinobacteridae RepID=B1VEP4_CORU7
tnp7109-63; transposase for insertion sequence
Uncharacterized protein {ECO:0000313|EMBL:EET78467.1}; TaxID=553206 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium tuberculostearicum SK141.;"
L3_131_000M1_scaffold_100_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41015..42391
DNA (1377bp) protein (459aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQC8_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53584.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 108 in total

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