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L3_131_000M1_scaffold_184

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_184_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..142
DNA (141bp) protein (47aa)
Transporter n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZM1_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Na+-dependent transporters of the SNF family
L3_131_000M1_scaffold_184_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(285..758)
DNA (474bp) protein (158aa)
Flavodoxins n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8Z6_9FIRM
Flavodoxins
Flavodoxins {ECO:0000313|EMBL:CBL16091.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(779..1213)
DNA (435bp) protein (145aa)
Uncharacterized conserved protein, contains double-stranded beta-helix domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8Z7_9FIRM
Uncharacterized conserved protein, contains double-stranded beta-helix domain
Uncharacterized conserved protein, contains double-stranded beta-helix domain {ECO:0000313|EMBL:CBL16092.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1234..1740)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8Z8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16093.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_5
unknown

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comp(1794..1934)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_131_000M1_scaffold_184_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2109..2567)
DNA (459bp) protein (153aa)
Transcriptional repressor NrdR n=3 Tax=root RepID=D4L8Z9_9FIRM
transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2667..4019)
DNA (1353bp) protein (451aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CBL16095.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CBL16095.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L900_9FIRM
L3_131_000M1_scaffold_184_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4047..6092)
DNA (2046bp) protein (682aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMG9_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCX81413.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_184_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6167..7813)
DNA (1647bp) protein (549aa)
DAK2 domain fusion protein YloV n=2 Tax=root RepID=R5DXR4_9FIRM
DAK2 domain fusion protein YloV {ECO:0000313|EMBL:CCX81412.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DAK2 domain fusion protein YloV
L3_131_000M1_scaffold_184_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8035..8808)
DNA (774bp) protein (258aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DME1_9FIRM
conserved hypothetical protein TIGR00282
Uncharacterized protein {ECO:0000313|EMBL:CBL16098.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8890..10068)
DNA (1179bp) protein (393aa)
Putative stage IV sporulation protein YqfD n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMG4_9FIRM
Putative stage IV sporulation protein YqfD {ECO:0000313|EMBL:CCX81408.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Putative stage IV sporulation protein YqfD.
L3_131_000M1_scaffold_184_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10078..10350)
DNA (273bp) protein (91aa)
Putative sporulation protein YqfC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMD6_9FIRM
Putative sporulation protein YqfC {ECO:0000313|EMBL:CCX81405.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_131_000M1_scaffold_184_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10424..11494
DNA (1071bp) protein (357aa)
Nucleoside recognition n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L905_9FIRM
Nucleoside recognition.
Nucleoside recognition {ECO:0000313|EMBL:CBL16100.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11508..13340
DNA (1833bp) protein (611aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:CBL16101.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CBL16101.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L906_9FIRM
L3_131_000M1_scaffold_184_15

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comp(14005..15984)
DNA (1980bp) protein (660aa)
Protein containing Cysteine, histidine-dependent amidohydrolase/peptidase domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TST4_9ZZZZ
Protein containing Cysteine, histidine-dependent amidohydrolase/peptidase domain protein {ECO:0000313|EMBL:EKC69260.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
CHAP domain./Lectin C-type domain.
L3_131_000M1_scaffold_184_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16446..16847)
DNA (402bp) protein (134aa)
Large-conductance mechanosensitive channel n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMC9_9FIRM
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
large conductance mechanosensitive channel protein
L3_131_000M1_scaffold_184_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16917..18143)
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMF2_9FIRM
L3_131_000M1_scaffold_184_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18217..18978)
DNA (762bp) protein (254aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXP6_9FIRM
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:CCX81397.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
comEC; ComE operon protein 3
L3_131_000M1_scaffold_184_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19109..21022)
DNA (1914bp) protein (638aa)
Fe-S oxidoreductase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L912_9FIRM
Fe-S oxidoreductase {ECO:0000313|EMBL:CBL16107.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Fe-S oxidoreductase
L3_131_000M1_scaffold_184_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21043..23799)
DNA (2757bp) protein (919aa)
FtsK/SpoIIIE family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMC2_9FIRM
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CCX81395.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ftsK; DNA translocase FtsK
L3_131_000M1_scaffold_184_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23821..24780)
DNA (960bp) protein (320aa)
Uncharacterized bacitracin resistance protein (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CBL16108.1};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Undecaprenyl-diphosphatase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L913_9FIRM
L3_131_000M1_scaffold_184_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24925..25734)
DNA (810bp) protein (270aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit ClpP {ECO:0000313|EMBL:CBL16109.1}; EC=3.4.21.92 {ECO:0000313|EMBL:CBL16109.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ATP-dependent Clp protease proteolytic subunit ClpP n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L914_9FIRM
L3_131_000M1_scaffold_184_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25987..27285
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81392.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_131_000M1_scaffold_184_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27331..27723)
DNA (393bp) protein (131aa)
Predicted membrane protein n=2 Tax=Ruminococcus RepID=D4L915_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL16110.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27791..28369)
DNA (579bp) protein (193aa)
Small primase-like proteins (Toprim domain) (EC:3.1.26.8)
Small primase-like proteins (Toprim domain) n=2 Tax=root RepID=R5DMB5_9FIRM
Small primase-like proteins (Toprim domain) {ECO:0000313|EMBL:CCX81390.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_184_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28369..29412)
DNA (1044bp) protein (348aa)
DNA polymerase III, delta subunit n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L917_9FIRM
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit {ECO:0000313|EMBL:CBL16112.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29414..31654)
DNA (2241bp) protein (747aa)
Predicted membrane metal-binding protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L918_9FIRM
Predicted membrane metal-binding protein {ECO:0000313|EMBL:CBL16113.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Predicted membrane metal-binding protein
L3_131_000M1_scaffold_184_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31667..32194)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L919_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16114.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_184_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32533..33069)
DNA (537bp) protein (179aa)
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins (EC:2.4.2.7)
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins n=2 Tax=Ruminococcus RepID=D4L920_9FIRM
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins {ECO:0000313|EMBL:CCX81384.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_184_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33085..33426)
DNA (342bp) protein (114aa)
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases n=2 Tax=Ruminococcus RepID=D4L921_9FIRM
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases {ECO:0000313|EMBL:CBL16116.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 107 in total

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