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L3_131_000M1_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_260_1
unknown

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2..205
DNA (204bp) protein (68aa)

This feature has no annotations

L3_131_000M1_scaffold_260_2
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(381..1091)
DNA (711bp) protein (237aa)
transposase n=4 Tax=Clostridium sporosphaeroides RepID=UPI000373AFCD
putative transposase
Putative transposase {ECO:0000313|EMBL:BAK98650.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_131_000M1_scaffold_260_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1375..1926
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82243.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_260_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2287..2997
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4D8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14483.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3260..4234
DNA (975bp) protein (325aa)
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTM6_9FIRM
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 {ECO:0000313|EMBL:CCX82244.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L3_131_000M1_scaffold_260_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4327..4971
DNA (645bp) protein (215aa)
von Willebrand factor type A domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4E0_9FIRM
von Willebrand factor type A domain.
von Willebrand factor type A domain {ECO:0000313|EMBL:CBL14485.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5025..6392)
DNA (1368bp) protein (456aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4E1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14486.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6486..6818)
DNA (333bp) protein (111aa)
Transcriptional regulator, PadR family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4E2_9FIRM
transcriptional regulator, PadR family
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CBL14487.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6901..8292)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82249.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_131_000M1_scaffold_260_10
unknown

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comp(8812..9303)
DNA (492bp) protein (164aa)

This feature has no annotations

L3_131_000M1_scaffold_260_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9321..11303)
DNA (1983bp) protein (661aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=2 Tax=root RepID=R5DWX1_9FIRM
L3_131_000M1_scaffold_260_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11559..13439)
DNA (1881bp) protein (627aa)
Chaperone protein HtpG n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DT42_9FIRM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Molecular chaperone, HSP90 family
L3_131_000M1_scaffold_260_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13685..15781
DNA (2097bp) protein (699aa)
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4E8_9FIRM
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily {ECO:0000313|EMBL:CBL14493.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_131_000M1_scaffold_260_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15959..17203
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83407.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Transglutaminase-like superfamily.
L3_131_000M1_scaffold_260_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17351..18613
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83409.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_131_000M1_scaffold_260_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18712..19473
DNA (762bp) protein (254aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4E9_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19466..20377
DNA (912bp) protein (304aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dihydroorotate dehydrogenase n=3 Tax=root RepID=D4L4F0_9FIRM
L3_131_000M1_scaffold_260_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20434..21138
DNA (705bp) protein (235aa)
Predicted membrane protein n=2 Tax=root RepID=R5E3S0_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCX83412.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted membrane protein
L3_131_000M1_scaffold_260_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21211..23247
DNA (2037bp) protein (679aa)
Alpha-glucosidases, family 31 of glycosyl hydrolases (EC:3.2.1.20)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTC4_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CCX83413.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_260_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23403..24245)
DNA (843bp) protein (281aa)
Predicted transcriptional regulators n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4F3_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL14498.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24410..25912)
DNA (1503bp) protein (501aa)
Phosphomannomutase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DT53_9FIRM
Phosphomannomutase {ECO:0000313|EMBL:CCX83415.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphomannomutase
L3_131_000M1_scaffold_260_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26451..26717
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4F5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14500.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_131_000M1_scaffold_260_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26865..27224
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=root RepID=R5E3S5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83417.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Protein of unknown function (DUF1292).
L3_131_000M1_scaffold_260_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27317..27739
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=root RepID=R5DTD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83418.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_260_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27781..29694
DNA (1914bp) protein (638aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWY8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX83419.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_131_000M1_scaffold_260_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31035..32204)
DNA (1170bp) protein (390aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=root RepID=R5E5J1_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCX83421.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L3_131_000M1_scaffold_260_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32388..33872)
DNA (1485bp) protein (495aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Glutamate synthase (NADH) small subunit {ECO:0000313|EMBL:CBL14583.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL14583.1};; EC=1.4.1.14 {ECO:0000313|EMBL:CBL14583.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate synthase (NADH) small subunit n=2 Tax=root RepID=D4L4N8_9FIRM
L3_131_000M1_scaffold_260_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33886..38427)
DNA (4542bp) protein (1514aa)
Glutamate synthase domain 2 (EC:1.4.1.13 1.4.1.14)
Glutamate synthase domain 2 {ECO:0000313|EMBL:CBL14584.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL14584.1};; EC=1.4.1.14 {ECO:0000313|EMBL:CBL14584.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate synthase domain 2 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4N9_9FIRM
L3_131_000M1_scaffold_260_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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39047..41140
DNA (2094bp) protein (698aa)
L-glutamine synthetase (EC:6.3.1.2)
L-glutamine synthetase n=2 Tax=root RepID=R5E5J7_9FIRM
L-glutamine synthetase {ECO:0000313|EMBL:CCX83426.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_131_000M1_scaffold_260_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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41274..42974
DNA (1701bp) protein (567aa)
Ammonium transporter n=2 Tax=root RepID=R5E3T7_9FIRM
Ammonium transporter {ECO:0000313|EMBL:CCX83427.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ammonium transporter
Displaying items 1-30 of 68 in total

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