ggKbase home page

L3_131_000M1_scaffold_300

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_300_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3..296)
DNA (294bp) protein (98aa)
Transcriptional regulator DeoR family n=1 Tax=Collinsella sp. CAG:166 RepID=R6A485_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74253.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_131_000M1_scaffold_300_2
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(459..2153)
DNA (1695bp) protein (565aa)
Putative PTS system lactose-specific IIC component n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLG9_9ACTN
Putative PTS system lactose-specific IIC component {ECO:0000313|EMBL:CDA35096.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system, lactose-specific IIBC component
L3_131_000M1_scaffold_300_3
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2510..3430
DNA (921bp) protein (307aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=R5Z8A3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35095.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PEP phosphonomutase family protein
L3_131_000M1_scaffold_300_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3503..4222
DNA (720bp) protein (240aa)
Transcriptional regulator, GntR family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8X6_9ACTN
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EBA39721.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
transcriptional regulator, GntR family
L3_131_000M1_scaffold_300_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4655..5419)
DNA (765bp) protein (255aa)
Transcriptional regulator DeoR family n=1 Tax=Collinsella sp. CAG:166 RepID=R6A485_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74253.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_131_000M1_scaffold_300_6
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5625..6677
DNA (1053bp) protein (351aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8X4_9ACTN
L3_131_000M1_scaffold_300_7
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6962..7486)
DNA (525bp) protein (175aa)
PTS system mannose/fructose/sorbose family transporter subunit IIB (EC:2.7.1.69)
PTS system, mannose/fructose/sorbose family, IIB component n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED14_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74255.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_131_000M1_scaffold_300_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7928..8401)
DNA (474bp) protein (158aa)
YhcH/YjgK/YiaL family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED12_9ACTN
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:EBA38563.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_131_000M1_scaffold_300_9
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8434..8535)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED11_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38562.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_131_000M1_scaffold_300_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8599..9534)
DNA (936bp) protein (312aa)
tagatose-6-phosphate kinase (EC:2.7.1.144)
Putative tagatose-6-phosphate kinase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED10_9ACTN
Putative tagatose-6-phosphate kinase {ECO:0000313|EMBL:EBA38561.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_131_000M1_scaffold_300_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9594..10475)
DNA (882bp) protein (294aa)
Aldose 1-epimerase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHJ9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74258.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
aldose-1-epimerase
L3_131_000M1_scaffold_300_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10632..11216
DNA (585bp) protein (195aa)
Flavodoxin n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZB24_9ACTN
Flavodoxin {ECO:0000313|EMBL:CDA36010.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_131_000M1_scaffold_300_13
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11292..12461)
DNA (1170bp) protein (390aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9Y1_9ACTN
L3_131_000M1_scaffold_300_14
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12579..13745)
DNA (1167bp) protein (389aa)
Sugar isomerase AgaS family n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZMT9_9ACTN
Sugar isomerase AgaS family {ECO:0000313|EMBL:CDA35651.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
galactosamine 6-phosphate isomerase AgaS
L3_131_000M1_scaffold_300_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13860..14591)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3E5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35652.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
GntR family transcriptional regulator
L3_131_000M1_scaffold_300_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14777..15859)
DNA (1083bp) protein (361aa)
PTS system N-acetylgalactosamine-specific EIID component Man family n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7I8_9ACTN
PTS system N-acetylgalactosamine-specific EIID component Man family {ECO:0000313|EMBL:CDA35653.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system N-acetylgalactosamine-specific transporter subunit IID
L3_131_000M1_scaffold_300_17
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15849..16649)
DNA (801bp) protein (267aa)
Phosphotransferase system PTS sorbose-specific IIC subunit n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGH9_9ACTN
Phosphotransferase system PTS sorbose-specific IIC subunit {ECO:0000313|EMBL:CDA35654.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS sorbose-specific transporter subunit IIC
L3_131_000M1_scaffold_300_18
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16740..17222)
DNA (483bp) protein (161aa)
PTS system mannose/fructose/sorbose family transporter subunit IIB (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9Y5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35655.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L3_131_000M1_scaffold_300_19
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17259..17540)
DNA (282bp) protein (94aa)
Preprotein translocase subunit n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZMU1_9ACTN
Preprotein translocase subunit {ECO:0000313|EMBL:CDA35656.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
YajC family protein
L3_131_000M1_scaffold_300_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17540..17983)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3E9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35657.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system fructose subfamily transporter subunit IIA
L3_131_000M1_scaffold_300_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18614..19699)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECZ4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38545.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_131_000M1_scaffold_300_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19826..20911)
DNA (1086bp) protein (362aa)
Putative isocitrate dehydrogenase NAD-dependent n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGI5_9ACTN
Putative isocitrate dehydrogenase NAD-dependent {ECO:0000313|EMBL:CDA35659.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
isocitrate dehydrogenase
L3_131_000M1_scaffold_300_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20918..21616)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECZ2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38542.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_131_000M1_scaffold_300_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21632..22060)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECZ1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38541.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_131_000M1_scaffold_300_25
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22066..23145)
DNA (1080bp) protein (360aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
Phosphogluconate dehydrogenase (Decarboxylating) NAD binding domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3F3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74272.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_131_000M1_scaffold_300_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23244..24197)
DNA (954bp) protein (318aa)
EDD domain protein, DegV family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECY8_9ACTN
EDD domain protein, DegV family {ECO:0000313|EMBL:EBA38539.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
degV family protein
L3_131_000M1_scaffold_300_27
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24277..24861)
DNA (585bp) protein (195aa)
Ribosomal subunit interface protein n=2 Tax=Collinsella RepID=A4ECY7_9ACTN
Ribosomal subunit interface protein {ECO:0000313|EMBL:EBA38538.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
30S ribosomal protein S30P; sigma 54 modulation protein
L3_131_000M1_scaffold_300_28
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25179..26189)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECY6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74275.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
family 3 extracellular solute-binding protein
L3_131_000M1_scaffold_300_29
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26924..27976)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECY5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74276.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_131_000M1_scaffold_300_30
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28045..28851)
DNA (807bp) protein (269aa)
Phosphoribosyl transferase domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3F7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74277.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
Displaying items 1-30 of 79 in total

View Taxonomy