ggKbase home page

L3_131_000M1_scaffold_346

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_346_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1154)
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72287.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
MobA/MobL family.
L3_131_000M1_scaffold_346_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1466..1693)
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72286.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_131_000M1_scaffold_346_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1869..2111)
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=2 Tax=Lachnospiraceae RepID=D4KT48_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10050.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_131_000M1_scaffold_346_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2203..3318)
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72284.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_131_000M1_scaffold_346_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3315..3638)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22766.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_131_000M1_scaffold_346_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3616..4716)
DNA (1101bp) protein (367aa)
Site-specific recombinase XerD n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KT45_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBL10047.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_131_000M1_scaffold_346_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4738..4920)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6PEK7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETD23174.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_131_000M1_scaffold_346_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5153..5677
DNA (525bp) protein (175aa)
Helix-turn-helix n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KT44_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL10046.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_131_000M1_scaffold_346_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6049..7173)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G544_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03030.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7177..8124)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G545_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03031.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8139..9158)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G546_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03032.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9199..10497)
DNA (1299bp) protein (433aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Cytosine-specific methyltransferase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G547_9FIRM
hypothetical protein
L3_131_000M1_scaffold_346_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10508..11389)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G548_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03034.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11401..11874)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G549_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03035.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12080..13582)
DNA (1503bp) protein (501aa)
Putative plasmid recombination enzyme n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G550_9FIRM
Putative plasmid recombination enzyme {ECO:0000313|EMBL:EEV03036.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13698..14075)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G551_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03037.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14109..14480)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G552_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03038.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14464..15558)
DNA (1095bp) protein (365aa)
Site-specific recombinase, phage integrase family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G553_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEV03039.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15558..15755)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G554_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03040.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16087..16719
DNA (633bp) protein (211aa)
DNA-binding helix-turn-helix protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G555_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEV03041.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_131_000M1_scaffold_346_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16737..18677
DNA (1941bp) protein (647aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G556_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03042.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
abortive infection phage resistance protein
L3_131_000M1_scaffold_346_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18789..20363)
DNA (1575bp) protein (525aa)
GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
GMP synthase [glutamine-hydrolyzing] n=4 Tax=Lachnospiraceae RepID=D4KY27_9FIRM
L3_131_000M1_scaffold_346_23
unknown

Not on your lists

comp(20716..20925)
DNA (210bp) protein (70aa)

This feature has no annotations

L3_131_000M1_scaffold_346_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21330..21848)
DNA (519bp) protein (173aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7G559_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12265.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_131_000M1_scaffold_346_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22158..22412)
DNA (255bp) protein (85aa)
Sporulation transcriptional regulator SpoIIID n=2 Tax=Roseburia RepID=C7G561_9FIRM
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:EEV03047.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
sporulation transcriptional regulator SpoIIID
L3_131_000M1_scaffold_346_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22481..22777)
DNA (297bp) protein (99aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7G562_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09959.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_131_000M1_scaffold_346_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22780..23049)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSV6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09958.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_131_000M1_scaffold_346_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23589..25565)
DNA (1977bp) protein (659aa)
Putative polysaccharide lyase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYB7_9FIRM
Putative polysaccharide lyase {ECO:0000313|EMBL:CDA56853.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
FMN-binding domain.
L3_131_000M1_scaffold_346_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25592..26131)
DNA (540bp) protein (180aa)
Membrane-associated lipoprotein involved in thiamine biosynthesis n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BCL5_9FIRM
ApbE family protein {ECO:0000313|EMBL:EEV03053.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Membrane-associated lipoprotein involved in thiamine biosynthesis
L3_131_000M1_scaffold_346_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26194..26631)
DNA (438bp) protein (146aa)
Membrane-associated lipoprotein involved in thiamine biosynthesis n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSV1_9FIRM
Membrane-associated lipoprotein involved in thiamine biosynthesis
Membrane-associated lipoprotein involved in thiamine biosynthesis {ECO:0000313|EMBL:CBL09953.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 74 in total

View Taxonomy