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L3_131_000M1_scaffold_371

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_371_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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96..923
DNA (828bp) protein (276aa)
gpmA; 2,3-bisphosphoglycerate-dependentphosphoglycerate mutase (EC:5.4.2.1)
2, 3-bisphosphoglycerate-dependentphosphoglycerate mutase n=4 Tax=Bifidobacterium bifidum RepID=I3WHN2_BIFBI
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:ERI82364.1}; Flags: Fragment;; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_131_000M1_scaffold_371_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1044..1454
DNA (411bp) protein (137aa)
Secreted protein n=8 Tax=Bifidobacterium RepID=I3WHN3_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CDB23284.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_131_000M1_scaffold_371_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1454..1693
DNA (240bp) protein (80aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WHN4_BIFBI
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:KFI42864.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_371_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1762..4485
DNA (2724bp) protein (908aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1B4_BIFBP
L3_131_000M1_scaffold_371_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4494..4952
DNA (459bp) protein (153aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Putative Holliday junction resolvase n=4 Tax=Bifidobacterium bifidum RepID=E4P1B5_BIFBP
endonuclease involved in recombination
L3_131_000M1_scaffold_371_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4964..6151
DNA (1188bp) protein (396aa)
Aminodeoxychorismate lyase n=3 Tax=Bifidobacterium bifidum RepID=E3EM32_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF14947.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_131_000M1_scaffold_371_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6148..6618)
DNA (471bp) protein (157aa)
Conserved hypothetical membrane spanning protein n=2 Tax=Bifidobacterium RepID=E3EM33_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB23289.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_131_000M1_scaffold_371_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6665..7858
DNA (1194bp) protein (398aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Chorismate synthase n=5 Tax=Bifidobacterium bifidum RepID=E3EM34_BIFBS
aroC; chorismate synthase
L3_131_000M1_scaffold_371_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7916..9538
DNA (1623bp) protein (541aa)
Shikimate kinase/3-dehydroquinate synthase n=3 Tax=Bifidobacterium bifidum RepID=E3EM35_BIFBS
aroB; shikimate kinase
Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:ADO53042.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_131_000M1_scaffold_371_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9628..10071
DNA (444bp) protein (148aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-dehydroquinate dehydratase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHP1_BIFBI
L3_131_000M1_scaffold_371_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10155..10409
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHP2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04405.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_371_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10484..11323)
DNA (840bp) protein (280aa)
LuxR family transcriptional regulator n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CDD2A
Response regulator receiver domain protein {ECO:0000313|EMBL:ERI82353.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
luxR; regulatory protein
L3_131_000M1_scaffold_371_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11398..12126)
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V9B3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50205.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
sortase
L3_131_000M1_scaffold_371_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12171..13838
DNA (1668bp) protein (556aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
CTP synthase n=7 Tax=Bifidobacterium RepID=E3EM40_BIFBS
pyrG; CTP synthase
L3_131_000M1_scaffold_371_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14060..15559
DNA (1500bp) protein (500aa)
FeS assembly protein SufB n=7 Tax=Bifidobacterium RepID=E3EM41_BIFBS
sufB; FeS assembly protein SufB
FeS assembly protein {ECO:0000313|EMBL:AFL04409.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_371_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15565..16794
DNA (1230bp) protein (410aa)
FeS assembly protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6V0_BIFBI
FeS assembly protein {ECO:0000313|EMBL:EKE50604.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
sufD; FeS assembly protein
L3_131_000M1_scaffold_371_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16797..17585
DNA (789bp) protein (263aa)
FeS assembly ATPase SufC n=6 Tax=Bifidobacterium RepID=E3EM43_BIFBS
sufC; FeS assembly ATPase SufC
FeS assembly ATPase {ECO:0000313|EMBL:AFL04411.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_371_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17807..19078
DNA (1272bp) protein (424aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Cysteine desulfurase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM44_BIFBS
iscS; cysteine desulfurase/Selenocysteine lyase
L3_131_000M1_scaffold_371_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19234..19782
DNA (549bp) protein (183aa)
IscU protein n=2 Tax=Bifidobacterium bifidum RepID=E4P1C9_BIFBP
iscU; IscU protein
NifU family SUF system FeS assembly protein {ECO:0000313|EMBL:EKE50601.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_131_000M1_scaffold_371_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19861..20445
DNA (585bp) protein (195aa)
Putative metal-sulfur cluster biosyntheticenzyme n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHQ1_BIFBI
paaD; putative metal-sulfur cluster biosyntheticenzyme
Putative metal-sulfur cluster biosyntheticenzyme {ECO:0000313|EMBL:AFL04414.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_371_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20551..21798)
DNA (1248bp) protein (416aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Glucose-1-phosphate adenylyltransferase n=8 Tax=Bifidobacterium RepID=E3EM47_BIFBS
L3_131_000M1_scaffold_371_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21964..22842)
DNA (879bp) protein (293aa)
SpoU rRNA methylase family protein n=7 Tax=Bifidobacterium RepID=E4P1D2_BIFBP
tnsR; putative tRNA/rRNA methyl transferase
SpoU rRNA methylase family protein {ECO:0000313|EMBL:CDB23304.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_131_000M1_scaffold_371_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23153..23950
DNA (798bp) protein (266aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVW0_BIFBI
RNA methyltransferase
L3_131_000M1_scaffold_371_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24024..24362
DNA (339bp) protein (113aa)
HIT family protein n=6 Tax=Bifidobacterium RepID=E4P1D4_BIFBP
putative HIT family hydrolase
HIT family protein {ECO:0000313|EMBL:KFI42884.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_371_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24371..25456
DNA (1086bp) protein (362aa)
PhoH PhoH protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1D5_BIFBP
phoH; PhoH protein
Phosphate starvation-induced protein {ECO:0000313|EMBL:AFL04419.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_131_000M1_scaffold_371_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25453..25998
DNA (546bp) protein (182aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Endoribonuclease YbeY n=8 Tax=Bifidobacterium RepID=E3EM52_BIFBS
putative metalloprotease
L3_131_000M1_scaffold_371_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26076..27494
DNA (1419bp) protein (473aa)
Hemolysin-like protein n=4 Tax=Bifidobacterium bifidum RepID=I3WHQ8_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42887.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_131_000M1_scaffold_371_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27543..28553
DNA (1011bp) protein (337aa)
GTPase Era n=6 Tax=Bifidobacterium RepID=I3WHQ9_BIFBI
era; GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_131_000M1_scaffold_371_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28654..30690)
DNA (2037bp) protein (679aa)
Long-chain-fatty-acid--CoA ligase n=2 Tax=Bifidobacterium RepID=R6GPX1_9BIFI
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDB23311.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
fadD3; long-chain-fatty-acid--CoA ligase
L3_131_000M1_scaffold_371_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30910..32049
DNA (1140bp) protein (380aa)
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha subunit n=8 Tax=Bifidobacterium RepID=E3EM56_BIFBS
PntA1 NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:CDB23312.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 102 in total

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