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L3_131_000M1_scaffold_1617

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_1617_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(155..985)
DNA (831bp) protein (277aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q7Y6_CLODI
Transcriptional regulator, TRAP family {ECO:0000313|EMBL:CCK99657.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
hypothetical protein
L3_131_000M1_scaffold_1617_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1221..1526)
DNA (306bp) protein (102aa)
RNA-binding protein Hfq n=6 Tax=Clostridium difficile RepID=D5Q417_CLODI
HfQ protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L3_131_000M1_scaffold_1617_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1551..2483)
DNA (933bp) protein (311aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
miaA; transfer RNA delta(2)-isopentenylpyrophosphatetransferase (EC:2.5.1.75)
UPI0003D60605 related cluster n=1 Tax=unknown RepID=UPI0003D60605
L3_131_000M1_scaffold_1617_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2500..4611)
DNA (2112bp) protein (704aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium difficile CD69 RepID=T3A4C6_CLODI
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
DNA mismatch repair protein MutL
L3_131_000M1_scaffold_1617_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4689..7544)
DNA (2856bp) protein (952aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium difficile CD160 RepID=T3DD52_CLODI
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
mutS; DNA mismatch repair protein
L3_131_000M1_scaffold_1617_6
unknown

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comp(7736..7834)
DNA (99bp) protein (33aa)

This feature has no annotations

L3_131_000M1_scaffold_1617_7
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7846..8343)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003652FBB
Acetyltransferase {ECO:0000313|EMBL:KGJ48186.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
acetyltransferase, GNAT family
L3_131_000M1_scaffold_1617_8
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8586..9617)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VEP8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK39122.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L3_131_000M1_scaffold_1617_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9762..10373
DNA (612bp) protein (204aa)
NUDIX domain protein n=1 Tax=Clostridium difficile CD160 RepID=T3DDR6_CLODI
NUDIX domain protein {ECO:0000313|EMBL:EQF24700.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
putative hydrolase, NUDIX family
L3_131_000M1_scaffold_1617_10
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10456..11889)
DNA (1434bp) protein (478aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
miaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VQ93_CLOBI
L3_131_000M1_scaffold_1617_11
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12028..12684
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VEQ2_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK39127.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L3_131_000M1_scaffold_1617_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12700..13080
DNA (381bp) protein (127aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q4W5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK86924.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
hypothetical protein
L3_131_000M1_scaffold_1617_13
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13109..13846)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:CEN27188.1}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:CEN27188.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CPT3_CLOSO
L3_131_000M1_scaffold_1617_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13871..15307)
DNA (1437bp) protein (479aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
HAMP domain protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CYY5_CLOSO
two-component sensor histidine kinase
L3_131_000M1_scaffold_1617_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15307..16005)
DNA (699bp) protein (233aa)
Transcriptional regulatory family protein n=23 Tax=Clostridium difficile RepID=T2UT63_CLODI
Two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CEJ98389.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_131_000M1_scaffold_1617_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16027..17394)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=133 Tax=Clostridium difficile RepID=G6BXP1_CLODI
putative lipoprotein
Lipoprotein {ECO:0000313|EMBL:CKH12689.1}; Putative lipoprotein {ECO:0000313|EMBL:CEJ98388.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_131_000M1_scaffold_1617_17
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17414..18028)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00035D4B2B
Uncharacterized protein {ECO:0000313|EMBL:KHS55532.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
HD domain-containing protein
L3_131_000M1_scaffold_1617_18
Zootermopsis nevadensis, Zootermopsis, Isoptera, Neoptera, Arthropoda, Metazoa

Not on your lists

comp(18174..19103)
DNA (930bp) protein (310aa)
Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2W6M6_NAEGR
Ribosome-binding protein 1 {ECO:0000313|EMBL:KDR12442.1}; TaxID=136037 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Orthopteroidea; Dictyoptera; Isoptera; Termopsidae; Zootermopsis.;" source="Zootermopsis nevadensis (Dampwood termite).;"
gerHA; spore germination protein
L3_131_000M1_scaffold_1617_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19166..20311)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=188 Tax=Clostridium difficile RepID=D5Q4X3_CLODI
methylase
Uncharacterized protein {ECO:0000313|EMBL:EFH15795.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L3_131_000M1_scaffold_1617_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20330..21127)
DNA (798bp) protein (266aa)
Asparagine synthase family protein n=4 Tax=Clostridium difficile RepID=T2YE91_CLODI
TIGR00268 family protein {ECO:0000313|EMBL:EHJ26507.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_131_000M1_scaffold_1617_21
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21267..21494
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T2RGT2_CLOSO
Uncharacterized protein {ECO:0000313|EMBL:EPZ54845.1}; TaxID=1292036 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] sordellii ATCC 9714.;"
Displaying 21 items

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