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L3_131_000M1_scaffold_2559

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_2559_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(768..1748)
DNA (981bp) protein (327aa)
Mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DFH6_CLODI
Mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein {ECO:0000313|EMBL:EQF26283.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
L3_131_000M1_scaffold_2559_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1880..2932)
DNA (1053bp) protein (351aa)
Bacterial extracellular solute-binding family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DEB2_CLODI
Bacterial extracellular solute-binding family protein {ECO:0000313|EMBL:EQF26229.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
potD; spermidine/putrescine ABC transporter substrate-binding protein
L3_131_000M1_scaffold_2559_3
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2932..3606)
DNA (675bp) protein (225aa)
Binding--dependent transport system inner membrane component family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W2Q3_CLOBI
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KGJ48177.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
potC; spermidine/putrescine ABC transporter permease
L3_131_000M1_scaffold_2559_4
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3711..4547)
DNA (837bp) protein (279aa)
Binding--dependent transport system inner membrane component family protein n=2 Tax=Clostridium sordellii RepID=T0EAA7_CLOSO
ABC transporter spermidine/putrescine permease {ECO:0000313|EMBL:CEN71264.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
potB; spermidine/putrescine ABC transporter permease
L3_131_000M1_scaffold_2559_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4549..5592)
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Polyamine ABC transporter, ATP-binding family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DI93_CLODI
spermidine/putrescine ABC transporter, ATP-binding protein
L3_131_000M1_scaffold_2559_6
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5609..6148)
DNA (540bp) protein (180aa)
Helix-turn-helix family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0D1R8_CLOSO
Transcriptional regulator {ECO:0000313|EMBL:CEQ26927.1}; Uncharacterized protein {ECO:0000313|EMBL:CEK32713.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
transcriptional regulator
L3_131_000M1_scaffold_2559_7
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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6970..7692
DNA (723bp) protein (241aa)
DNA-binding protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003638BF2
DNA-binding protein {ECO:0000313|EMBL:KHS55739.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
S1 RNA binding domain
L3_131_000M1_scaffold_2559_8
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7734..9359)
DNA (1626bp) protein (542aa)
Aspartate 4-decarboxylase {ECO:0000313|EMBL:EFF63463.1}; EC=4.1.1.12 {ECO:0000313|EMBL:EFF63463.1};; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
aspartate aminotransferase n=1 Tax=Bacillus sp. AP8 RepID=UPI0003050CB3
aspartate 4-decarboxylase
L3_131_000M1_scaffold_2559_9
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9706..10680)
DNA (975bp) protein (325aa)
putative peptidase, M19 family (EC:3.4.13.19)
Putative dipeptidase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CYY6_9CLOT
Putative dipeptidase {ECO:0000313|EMBL:EOD01794.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
L3_131_000M1_scaffold_2559_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10846..11607
DNA (762bp) protein (254aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=T3IFJ5_CLODC
putative membrane protein
Membrane spanning protein {ECO:0000313|EMBL:CKH68648.1}; Putative membrane protein {ECO:0000313|EMBL:CEJ97049.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS83741.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_131_000M1_scaffold_2559_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11609..12058
DNA (450bp) protein (150aa)
Uncharacterized protein n=11 Tax=Clostridium difficile RepID=T2XYK7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF27244.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
membrane protein
L3_131_000M1_scaffold_2559_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12343..12822)
DNA (480bp) protein (160aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=7 Tax=Clostridium difficile RepID=D5Q1F6_CLODI
regulatory protein
L3_131_000M1_scaffold_2559_13
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12983..14773)
DNA (1791bp) protein (597aa)
M24 family peptidase {ECO:0000313|EMBL:CEO20532.1}; EC=3.4.13.9 {ECO:0000313|EMBL:CEO20532.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Metallopeptidase M24 family protein n=2 Tax=Clostridium sordellii RepID=T0EFM0_CLOSO
putative peptidase, M24 family
L3_131_000M1_scaffold_2559_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15335..16165)
DNA (831bp) protein (277aa)
Putative cobalt ABC transporter, permease protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RS17_CLOPF
cobalt ABC transporter permease
Putative cobalt ABC transporter, permease protein {ECO:0000313|EMBL:ABG86619.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_131_000M1_scaffold_2559_15
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16168..17868)
DNA (1701bp) protein (567aa)
Heme ABC exporter, ATP-binding protein CcmA {ECO:0000313|EMBL:EQK44536.1}; EC=3.6.3.41 {ECO:0000313|EMBL:EQK44536.1};; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
putative ABC transporter ATP-binding protein (EC:3.6.3.-)
Heme ABC exporter, ATP-binding protein CcmA n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VUR4_CLOBI
L3_131_000M1_scaffold_2559_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17885..18445)
DNA (561bp) protein (187aa)
UPF0397 protein CCH01_015430 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FNK7_9CLOT
UPF0397 protein CCH01_015430 {ECO:0000256|HAMAP-Rule:MF_01572}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_131_000M1_scaffold_2559_17
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18596..20560)
DNA (1965bp) protein (655aa)
UPF0313 protein C671_0607 n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W3F4_CLOBI
UPF0313 protein JGS444_32041 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
Displaying 17 items

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