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L3_131_000M1_scaffold_1289

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_1289_1
unknown

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2..157
DNA (156bp) protein (52aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_2
unknown

Not on your lists

comp(394..1026)
DNA (633bp) protein (211aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_3
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1410..3131)
DNA (1722bp) protein (574aa)
Fibronectin-binding protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FUC2_9PROT
Fibronectin-binding protein {ECO:0000313|EMBL:CDE18894.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
putative RNA-binding protein, snRNP like protein
L3_131_000M1_scaffold_1289_4
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3521..4828
DNA (1308bp) protein (436aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Trigger factor n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FVM4_9PROT
trigger factor
L3_131_000M1_scaffold_1289_5
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4825..5418
DNA (594bp) protein (198aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KBX4_9FIRM
L3_131_000M1_scaffold_1289_6
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5713..6951
DNA (1239bp) protein (413aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FW62_9PROT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
endopeptidase Clp ATP-binding regulatory subunit ClpX
L3_131_000M1_scaffold_1289_7
unknown

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comp(7060..7671)
DNA (612bp) protein (204aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_8
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8263..10704
DNA (2442bp) protein (814aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A766_9FIRM
L3_131_000M1_scaffold_1289_9
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10817..11503
DNA (687bp) protein (229aa)
Probable GTP-binding protein EngB n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FV75_9PROT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
GTP-binding protein YsxC
L3_131_000M1_scaffold_1289_10
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11772..12674
DNA (903bp) protein (301aa)
Pilin glycosylation protein PglB n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IN93_9BACE
Pilin glycosylation protein PglB {ECO:0000313|EMBL:EFI10820.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
UDP-galactose phosphate transferase
L3_131_000M1_scaffold_1289_11
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

comp(13136..14056)
DNA (921bp) protein (307aa)
gamma-D-glutamyl-L-lysine endopeptidase (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IA57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB43354.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
L3_131_000M1_scaffold_1289_12
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14396..15280
DNA (885bp) protein (295aa)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Clostridium sp. CAG:349 RepID=R6WH26_9CLOT
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CDD10433.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
hypothetical protein
L3_131_000M1_scaffold_1289_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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15389..16153
DNA (765bp) protein (255aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLP1_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEA83088.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative Zn-dependent hydrolase
L3_131_000M1_scaffold_1289_14
Brachyspira intermedia, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

16387..18912
DNA (2526bp) protein (842aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036C27BE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM20801.1}; TaxID=1045858 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira intermedia (strain ATCC 51140 / PWS/A) (Serpulina; intermedia).;"
L3_131_000M1_scaffold_1289_15
unknown

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18912..19121
DNA (210bp) protein (70aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_16
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19433..20167
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IVR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE55458.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
yfnB; hydrolase
L3_131_000M1_scaffold_1289_17
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20399..21112
DNA (714bp) protein (238aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ESA0_9FIRM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:CDE04367.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
nicotinamide mononucleotide transporter PnuC
L3_131_000M1_scaffold_1289_18
unknown

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comp(21218..22024)
DNA (807bp) protein (269aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_19
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22214..22759)
DNA (546bp) protein (182aa)
Stage V sporulation protein T n=2 Tax=Clostridium botulinum RepID=C5VPH3_CLOBO
Stage V sporulation protein T {ECO:0000313|EMBL:EYE87899.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
AbrB family transcriptional regulator
L3_131_000M1_scaffold_1289_20
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23256..24581)
DNA (1326bp) protein (442aa)
Integrase family protein n=1 Tax=Clostridium sp. CAG:349 RepID=R6XSD5_9CLOT
Integrase family protein {ECO:0000313|EMBL:CDD09222.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
integrase family protein
L3_131_000M1_scaffold_1289_21
GWA1_OP11_43_12, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(24708..25574)
DNA (867bp) protein (289aa)
phage antirepressor n=1 Tax=Lachnobacterium bovis RepID=UPI0003B465ED
Uncharacterized protein {ECO:0000313|EMBL:KKS91050.1}; TaxID=1618557 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_43_12.;"
hypothetical protein
L3_131_000M1_scaffold_1289_22
unknown

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comp(25589..25927)
DNA (339bp) protein (113aa)

This feature has no annotations

L3_131_000M1_scaffold_1289_23
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(25947..26375)
DNA (429bp) protein (143aa)
Putative transcriptional regulator n=1 Tax=Thermoanaerobacter thermohydrosulfuricus WC1 RepID=M8CV07_THETY
Putative transcriptional regulator {ECO:0000313|EMBL:EMT38188.1}; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter thermohydrosulfuricus WC1.;"
HTH/TPR domain-containing protein
L3_131_000M1_scaffold_1289_24
Thermoanaerobacter sp. X514, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(26378..26746)
DNA (369bp) protein (123aa)
Transcriptional regulator, XRE family n=3 Tax=Thermoanaerobacter RepID=B0K4S0_THEPX
helix-turn-helix domain-containing protein
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABY92009.1}; TaxID=399726 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. (strain X514).;"
Displaying 24 items

View Taxonomy