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L3_131_000M1_scaffold_2309

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_2309_1
Firmicutes bacterium CAG:345, Firmicutes, Bacteria

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3..1007
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:345 RepID=R6Y4Y4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD23726.1}; TaxID=1263020 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:345.;"
L3_131_000M1_scaffold_2309_2
unknown

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1082..2035
DNA (954bp) protein (318aa)

This feature has no annotations

L3_131_000M1_scaffold_2309_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2410..3141)
DNA (732bp) protein (244aa)
Renal dipeptidase family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKV5_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:CCZ66358.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
membrane dipeptidase
L3_131_000M1_scaffold_2309_4
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(3298..3975)
DNA (678bp) protein (226aa)
Thiamine pyrophosphokinase n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VX06_CLOBI
Thiamine pyrophosphokinase {ECO:0000313|EMBL:CDB26982.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
thiamine pyrophosphokinase
L3_131_000M1_scaffold_2309_5
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4087..4743)
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYW3_9PROT
ribulose-phosphate 3-epimerase
L3_131_000M1_scaffold_2309_6
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4813..5883)
DNA (1071bp) protein (357aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G338_9PROT
radical SAM protein
L3_131_000M1_scaffold_2309_7
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5994..7226)
DNA (1233bp) protein (411aa)
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FZT6_9PROT
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:CDE20420.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L3_131_000M1_scaffold_2309_8
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7220..8158)
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Methionyl-tRNA formyltransferase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G0W9_9PROT
methionyl-tRNA formyltransferase
L3_131_000M1_scaffold_2309_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8267..8719)
DNA (453bp) protein (151aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Peptide deformylase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFT9_9FIRM
peptide deformylase
L3_131_000M1_scaffold_2309_10
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8865..11039)
DNA (2175bp) protein (725aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Primosomal protein N (Replication factor Y)-superfamily II helicase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYV5_9PROT
PriA; primosomal protein N
L3_131_000M1_scaffold_2309_11
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11320..11541)
DNA (222bp) protein (74aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G329_9PROT
L3_131_000M1_scaffold_2309_12
unknown

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comp(11598..11780)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_131_000M1_scaffold_2309_13
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11850..12230)
DNA (381bp) protein (127aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K6E8_9FIRM
L3_131_000M1_scaffold_2309_14
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12537..13412)
DNA (876bp) protein (292aa)
TIGR00255 family protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G0F9_9PROT
TIGR00255 family protein {ECO:0000313|EMBL:CDE20411.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_131_000M1_scaffold_2309_15
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(13679..14374)
DNA (696bp) protein (232aa)
Putative uncharacterized protein id=3938043 bin=GWF2_Clostridiales_38_85 species=Clostridium papyrosolvens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_131_000M1_scaffold_2309_16
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14426..16393)
DNA (1968bp) protein (656aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FZS9_9PROT
L3_131_000M1_scaffold_2309_17
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(16485..18821)
DNA (2337bp) protein (779aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
ATP-dependent DNA helicase PcrA n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GNK4_9FIRM
ATP-dependent DNA helicase PcrA
L3_131_000M1_scaffold_2309_18
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(19201..19470)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HM75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27017.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
Displaying 18 items

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