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L3_131_000M1_scaffold_195

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_195_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(209..2086)
DNA (1878bp) protein (626aa)
Cadmium-translocating P-type ATPase n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WWD2_9FIRM
Cadmium-translocating P-type ATPase {ECO:0000313|EMBL:EGX68322.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
cadmium-translocating P-type ATPase
L3_131_000M1_scaffold_195_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2118..2336)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I1R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30701.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_131_000M1_scaffold_195_3
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2623..3585
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZGG2_9CLOT
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03396.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_131_000M1_scaffold_195_4
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4098..4853)
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Clostridiales RepID=R7D5K4_9FIRM
L3_131_000M1_scaffold_195_5
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4893..5819)
DNA (927bp) protein (309aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium sp. CAG:632 RepID=R5JYE4_9CLOT
L3_131_000M1_scaffold_195_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6117..6794)
DNA (678bp) protein (226aa)
Single-strand binding family protein n=3 Tax=Clostridium symbiosum RepID=U2BX27_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91971.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
ssDNA-binding protein
L3_131_000M1_scaffold_195_7
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7283..7771)
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KE09_9FIRM
L3_131_000M1_scaffold_195_8
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7840..9102)
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Clostridium sp. CAG:632 RepID=R5JWA8_9CLOT
L3_131_000M1_scaffold_195_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9364..10509)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46382.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_131_000M1_scaffold_195_10
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10522..12162)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AHY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ26068.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
AraC family transcriptional regulator
L3_131_000M1_scaffold_195_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12230..13096)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B254_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78326.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_131_000M1_scaffold_195_12
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(13080..14138)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XS68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA15364.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
ABC-type multidrug transport system, ATPase component
L3_131_000M1_scaffold_195_13
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14410..15495
DNA (1086bp) protein (362aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
3-phosphoserine/phosphohydroxythreonine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JYZ1_9CLOT
L3_131_000M1_scaffold_195_14
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15492..16652
DNA (1161bp) protein (387aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Clostridium sp. CAG:167 RepID=R5W2Y7_9CLOT
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:CCZ90171.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
L3_131_000M1_scaffold_195_15
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16693..17748)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RQ54_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ40774.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_131_000M1_scaffold_195_16
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17761..22977)
DNA (5217bp) protein (1739aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RHS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ40775.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_131_000M1_scaffold_195_17
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23240..24562)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN41332.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
CBS/transporter associated domain protein
L3_131_000M1_scaffold_195_18
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24690..26096)
DNA (1407bp) protein (469aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
Uronate isomerase n=1 Tax=Eubacterium sp. CAG:248 RepID=R6K4N3_9FIRM
glucuronate isomerase
L3_131_000M1_scaffold_195_19
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26298..27776)
DNA (1479bp) protein (493aa)
Altronate dehydratase {ECO:0000313|EMBL:KJJ71125.1}; EC=4.2.1.7 {ECO:0000313|EMBL:KJJ71125.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
altronate dehydratase (EC:4.2.1.7)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HCV6_9CLOT
L3_131_000M1_scaffold_195_20
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27868..29196)
DNA (1329bp) protein (443aa)
uxaB; altronate oxidoreductase UxaB (EC:1.1.1.58)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IAV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61273.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
L3_131_000M1_scaffold_195_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29263..29529)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SFU0_RUMAL
Uncharacterized protein {ECO:0000313|EMBL:KHD16495.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_131_000M1_scaffold_195_22
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29711..33004)
DNA (3294bp) protein (1098aa)
SNF2 family N-terminal domain protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FK11_9FIRM
SNF2 family N-terminal domain protein {ECO:0000313|EMBL:CDB13563.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Superfamily II DNA/RNA helicases, SNF2 family
L3_131_000M1_scaffold_195_23
unknown

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comp(33001..34554)
DNA (1554bp) protein (518aa)

This feature has no annotations

L3_131_000M1_scaffold_195_24
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34805..35725
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
Homoserine O-succinyltransferase n=1 Tax=Clostridium sp. CAG:167 RepID=R5VKA3_9CLOT
hypothetical protein
L3_131_000M1_scaffold_195_25
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(35767..37155)
DNA (1389bp) protein (463aa)
Putative efflux protein MATE family n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BHJ5_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDD64613.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
putative efflux protein, MATE family
L3_131_000M1_scaffold_195_26
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37196..38275)
DNA (1080bp) protein (360aa)
Putative threonine-phosphate decarboxylase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSZ0_9FIRM
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:EEG94219.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
L3_131_000M1_scaffold_195_27
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38301..39362)
DNA (1062bp) protein (354aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSZ1_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_131_000M1_scaffold_195_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39359..40012)
DNA (654bp) protein (218aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73)
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:CBL09428.1}; EC=3.1.3.73 {ECO:0000313|EMBL:CBL09428.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Fructose-2,6-bisphosphatase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRC6_9FIRM
L3_131_000M1_scaffold_195_29
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39985..40407)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B4361E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN96920.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_131_000M1_scaffold_195_30
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(40422..41192)
DNA (771bp) protein (257aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Cobalamin-5-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EFX4_9FIRM
Displaying items 1-30 of 68 in total

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