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L3_131_000M1_scaffold_418

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Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_418_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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299..2215
DNA (1917bp) protein (639aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA topoisomerase IV subunit B n=1 Tax=Clostridium sp. CAG:81 RepID=R5GGS5_9CLOT
DNA topoisomerase IV subunit B {ECO:0000313|EMBL:CCY12022.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_131_000M1_scaffold_418_2
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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2499..4736
DNA (2238bp) protein (746aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
DNA gyrase A subunit n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6RNT0_9FIRM
DNA gyrase subunit A
L3_131_000M1_scaffold_418_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4785..6050
DNA (1266bp) protein (422aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Clostridium sp. CAG:58 RepID=R6SU78_9CLOT
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CDC50147.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L3_131_000M1_scaffold_418_4
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6103..6714
DNA (612bp) protein (204aa)
Ribosome maturation factor RimP n=3 Tax=Clostridium RepID=D6DFX1_CLOSC
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L3_131_000M1_scaffold_418_5
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6793..7947
DNA (1155bp) protein (385aa)
Putative transcription termination factor NusA n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LLB3_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
transcription termination factor NusA
L3_131_000M1_scaffold_418_6
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7959..8249
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6DLK4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA85176.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_131_000M1_scaffold_418_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8239..8544
DNA (306bp) protein (102aa)
Ribosomal protein L7Ae n=2 Tax=Clostridiales RepID=A7B8A4_RUMGN
Ribosomal protein L7Ae {ECO:0000313|EMBL:EDN75837.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_131_000M1_scaffold_418_8
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8568..11564
DNA (2997bp) protein (999aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R784_CLOSW
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_131_000M1_scaffold_418_9
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11629..12027
DNA (399bp) protein (133aa)
Ribosome-binding factor A n=4 Tax=Clostridiales RepID=D4MR76_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_131_000M1_scaffold_418_10
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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12031..13017
DNA (987bp) protein (329aa)
DHH family/DHHA1 domain protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R0P4_9FIRM
DHH family/DHHA1 domain protein {ECO:0000313|EMBL:CDC42418.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Exopolyphosphatase-related proteins
L3_131_000M1_scaffold_418_11
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12998..13936
DNA (939bp) protein (313aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XS09_9CLOT
tRNA pseudouridine synthase B
L3_131_000M1_scaffold_418_12
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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13970..14938
DNA (969bp) protein (323aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZM08_9FIRM
L3_131_000M1_scaffold_418_13
Stomatobaculum longum, Stomatobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14901..16172
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Stomatobaculum longum RepID=H1HWA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO15972.1}; TaxID=796942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Stomatobaculum.;" source="Stomatobaculum longum.;"
NLP/P60 protein
L3_131_000M1_scaffold_418_14
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16301..16567
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZS0_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
30S ribosomal protein S15
L3_131_000M1_scaffold_418_15
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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16847..18934
DNA (2088bp) protein (696aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BA05_9FIRM
L3_131_000M1_scaffold_418_16
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19024..20775
DNA (1752bp) protein (584aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9V6_9FIRM
L3_131_000M1_scaffold_418_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20909..24178
DNA (3270bp) protein (1090aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9WXA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY92147.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
SNF2-like protein
L3_131_000M1_scaffold_418_18
unknown

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comp(24134..25540)
DNA (1407bp) protein (469aa)

This feature has no annotations

L3_131_000M1_scaffold_418_19
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25626..26468
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DXX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX85100.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_131_000M1_scaffold_418_20
unknown

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26531..27247
DNA (717bp) protein (239aa)

This feature has no annotations

L3_131_000M1_scaffold_418_21
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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27280..28839
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BMD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD66268.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
glycoside hydrolase family 28
L3_131_000M1_scaffold_418_22
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29205..29909
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JBE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS31428.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
Protease subunit of ATP-dependent Clp proteases
L3_131_000M1_scaffold_418_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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29906..33061
DNA (3156bp) protein (1052aa)
DNA segregation ATPase FtsK/SpoIIIE n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X9S8_9CLOT
DNA segregation ATPase FtsK/SpoIIIE {ECO:0000313|EMBL:ENY92441.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
DNA segregation ATPase FtsK/SpoIIIE and related proteins
L3_131_000M1_scaffold_418_24
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

33087..34757
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XFU6_9FIRM
L3_131_000M1_scaffold_418_25
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34783..36285
DNA (1503bp) protein (501aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D991_9CLOT
UDP-N-acetylmuramyl-tripeptide synthetase
L3_131_000M1_scaffold_418_26
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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36282..37655
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Clostridium RepID=R5T4Z0_9CLOT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
L3_131_000M1_scaffold_418_27
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37666..39876
DNA (2211bp) protein (737aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
Primosomal protein N' n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R256_CLOSW
primosomal protein N'
L3_131_000M1_scaffold_418_28
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39911..40444
DNA (534bp) protein (178aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Peptide deformylase n=3 Tax=Clostridium RepID=D6DK39_CLOSC
L3_131_000M1_scaffold_418_29
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40487..41425
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9B3_9CLOT
L3_131_000M1_scaffold_418_30
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41462..42166
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J5B9_9FIRM
putative Zn-dependent protease
Uncharacterized protein {ECO:0000313|EMBL:EOS26382.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Displaying items 1-30 of 49 in total

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