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L3_131_000M1_scaffold_3076

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_000M1_scaffold_3076_1

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comp(1..180)
DNA (180bp) protein (60aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=3 Tax=root RepID=B0MSJ8_9BACT
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:EKC66946.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_131_000M1_scaffold_3076_2
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(203..811)
DNA (609bp) protein (203aa)
30S ribosomal protein S4 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IML5_9BACT
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_3
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(862..1251)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IML4_9BACT
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_4
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1265..1645)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IML3_9BACT
SSU ribosomal protein S13P
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_5
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1683..1799)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=7 Tax=Alistipes RepID=D4IML2_9BACT
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_131_000M1_scaffold_3076_6
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1818..2036)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IML1_9BACT
bacterial translation initiation factor 1 (bIF-1)
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_7
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2043..2819)
DNA (777bp) protein (259aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBK64172.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
Methionine aminopeptidase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IML0_9BACT
L3_131_000M1_scaffold_3076_8
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2851..4227)
DNA (1377bp) protein (459aa)
Protein translocase subunit SecY n=3 Tax=Alistipes RepID=I3YM37_ALIFI
protein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
L3_131_000M1_scaffold_3076_9
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4250..4696)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=2 Tax=Alistipes RepID=D4IMK9_9BACT
LSU ribosomal protein L15P
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_131_000M1_scaffold_3076_10
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4722..4973)
DNA (252bp) protein (84aa)
50S ribosomal protein L30 n=1 Tax=Alistipes sp. CAG:53 RepID=R5WVF2_9BACT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
50S ribosomal protein L30
L3_131_000M1_scaffold_3076_11
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4988..5506)
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=2 Tax=Alistipes RepID=D4IMK8_9BACT
SSU ribosomal protein S5P
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_12
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5513..5875)
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=2 Tax=Alistipes RepID=R6XWB9_9BACT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
50S ribosomal protein L18
L3_131_000M1_scaffold_3076_13
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5892..6479)
DNA (588bp) protein (196aa)
50S ribosomal protein L6 n=2 Tax=Alistipes RepID=E4MBF4_9BACT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
50S ribosomal protein L6
L3_131_000M1_scaffold_3076_14
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6505..6903)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Alistipes sp. JC136 RepID=UPI000289ADDD
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
30S ribosomal protein S8
L3_131_000M1_scaffold_3076_15
unknown

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7133..7630
DNA (498bp) protein (166aa)

This feature has no annotations

L3_131_000M1_scaffold_3076_16
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7611..7907)
DNA (297bp) protein (99aa)
30S ribosomal protein S14 n=2 Tax=Alistipes RepID=UPI0002894E69
30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_131_000M1_scaffold_3076_17
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7911..8471)
DNA (561bp) protein (187aa)
50S ribosomal protein L5 n=3 Tax=Alistipes RepID=I3YM28_ALIFI
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_131_000M1_scaffold_3076_18
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8471..8791)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Alistipes sp. CAG:53 RepID=R5VXK4_9BACT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
LSU ribosomal protein L24P
L3_131_000M1_scaffold_3076_19
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8812..9177)
DNA (366bp) protein (122aa)
50S ribosomal protein L14 n=1 Tax=Alistipes sp. JC136 RepID=UPI000289604E
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L3_131_000M1_scaffold_3076_20

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comp(9180..9434)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=5 Tax=root RepID=I3YM25_ALIFI
30S ribosomal protein S17
Ribosomal protein S17, bacterial-type {ECO:0000313|EMBL:EKC45661.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_131_000M1_scaffold_3076_21
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(9446..9637)
DNA (192bp) protein (64aa)
50S ribosomal protein L29 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IMJ9_9BACT
LSU ribosomal protein L29P
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_22
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(9650..10078)
DNA (429bp) protein (143aa)
50S ribosomal protein L16 n=1 Tax=Alistipes senegalensis RepID=UPI00036E461A
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_131_000M1_scaffold_3076_23
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10106..10894)
DNA (789bp) protein (263aa)
30S ribosomal protein S3 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IMJ7_9BACT
SSU ribosomal protein S3P
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_131_000M1_scaffold_3076_24
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10899..11309)
DNA (411bp) protein (137aa)
50S ribosomal protein L22 n=1 Tax=Alistipes sp. CAG:268 RepID=R6VPP7_9BACT
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
L3_131_000M1_scaffold_3076_25
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(11317..11586)
DNA (270bp) protein (90aa)
30S ribosomal protein S19 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4IMJ5_9BACT
SSU ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
Displaying 25 items

View Taxonomy