ggKbase home page

L3_131_034G1_scaffold_135

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_034G1_scaffold_135_1
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66..311)
DNA (246bp) protein (82aa)
Integrase n=1 Tax=Escherichia coli WV_060327 RepID=E7U7N8_ECOLX
Prophage CP4-57 integrase
Mobile element protein {ECO:0000313|EMBL:CDL24206.1}; TaxID=1432554 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS53.;"
L3_131_034G1_scaffold_135_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1092..1574)
DNA (483bp) protein (161aa)
SsrA-binding protein n=1351 Tax=Enterobacteriaceae RepID=SSRP_ECO24
smpB; SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; Small protein B {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_131_034G1_scaffold_135_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1706..2182
DNA (477bp) protein (159aa)
Persistence and stress-resistance toxin PasT n=390 Tax=Escherichia RepID=PAST_ECOL6
yfjG; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE08409.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_131_034G1_scaffold_135_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2172..2462
DNA (291bp) protein (97aa)
Protein RnfH n=4 Tax=Escherichia coli RepID=E7U7N5_ECOLX
hypothetical protein
UPF0125 protein ECDEC1C_3500 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
L3_131_034G1_scaffold_135_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..2865)
DNA (342bp) protein (114aa)
Outer membrane protein assembly factor BamE n=1339 Tax=Enterobacteriaceae RepID=BAME_ECOL6
OmlA family protein
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
L3_131_034G1_scaffold_135_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3014..4675)
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=28 Tax=Escherichia coli RepID=B7MYA8_ECO81
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
recN; recombination and repair protein
L3_131_034G1_scaffold_135_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4761..5639)
DNA (879bp) protein (293aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; EC=2.7.1.23 {ECO:0000255|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; TaxID=362663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O6:K15:H31 (strain 536 / UPEC).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=370 Tax=Escherichia RepID=PPNK_ECO27
L3_131_034G1_scaffold_135_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5762..6355
DNA (594bp) protein (198aa)
Protein GrpE n=14 Tax=Escherichia coli RepID=T6DIZ6_ECOLX
grpE; heat shock protein HSP70 cofactor
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1444037 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C1.;"
L3_131_034G1_scaffold_135_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6410..7651)
DNA (1242bp) protein (414aa)
UPF0053 inner membrane protein yfjD n=102 Tax=Enterobacteriaceae RepID=E2QQ69_ECOLX
corB; putative magnesium transport protein
Uncharacterized protein {ECO:0000313|EMBL:EMX34776.1}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
L3_131_034G1_scaffold_135_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7717..8583)
DNA (867bp) protein (289aa)
Inner membrane protein ypjD n=1 Tax=Escherichia coli KTE101 RepID=L4FV51_ECOLX
ypjD; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD57717.1}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L3_131_034G1_scaffold_135_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8675..10036
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=1280 Tax=Enterobacteriaceae RepID=SRP54_ECO57
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306, ECO:0000313|EMBL:CBJ02321.1}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=316401 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O78:H11 (strain H10407 / ETEC).;"
L3_131_034G1_scaffold_135_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10285..10533
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=1 Tax=Escherichia coli MS 185-1 RepID=D8CJ66_ECOLX
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE030_MS-09.;"
L3_131_034G1_scaffold_135_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10552..11100
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1393 Tax=Enterobacteriaceae RepID=RIMM_SHIBS
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L3_131_034G1_scaffold_135_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11131..11898
DNA (768bp) protein (256aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA (guanine-N(1)-)-methyltransferase; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1446560 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O121:H19 str. 2010C-3609.;"
tRNA (guanine-N(1)-)-methyltransferase n=1264 Tax=Enterobacteriaceae RepID=TRMD_ECO24
trmD; tRNA (guanine-1-)-methyltransferase
L3_131_034G1_scaffold_135_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11940..12287
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1440 Tax=Enterobacteriaceae RepID=RL19_ECO24
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
L3_131_034G1_scaffold_135_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12364..12846)
DNA (483bp) protein (161aa)
OmpA family protein n=10 Tax=Escherichia coli RepID=E6ANX4_ECOLX
yfiB; putative outer membrane lipoprotein
Putative outer membrane lipoprotein {ECO:0000313|EMBL:CAR09211.2}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
L3_131_034G1_scaffold_135_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12862..14088)
DNA (1227bp) protein (409aa)
Inner membrane protein yfiN n=116 Tax=Escherichia coli RepID=E2QQ61_ECOLX
yfiN; Inner membrane protein yfiN
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ELJ69657.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_131_034G1_scaffold_135_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14078..14596)
DNA (519bp) protein (173aa)
Uncharacterized protein yfiR n=346 Tax=Escherichia RepID=E2QQ60_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZJ38119.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L3_131_034G1_scaffold_135_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14745..15110)
DNA (366bp) protein (122aa)
Uncharacterized protein n=238 Tax=Escherichia RepID=Q1R8C3_ECOUT
putative lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:KEJ56076.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_131_034G1_scaffold_135_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15320..16390
DNA (1071bp) protein (357aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361, ECO:0000313|EMBL:CKH06739.1}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361, ECO:0000313|EMBL:CKH06739.1};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=112 Tax=Enterobacteriaceae RepID=A1AED1_ECOK1
L3_131_034G1_scaffold_135_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16401..17522
DNA (1122bp) protein (374aa)
tyrA; bifunctional chorismate mutase/prephenate dehydrogenase (EC:1.3.1.12 5.4.99.5)
T-protein n=227 Tax=Escherichia RepID=A1AED0_ECOK1
T-protein {ECO:0000256|PIRNR:PIRNR001499}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_131_034G1_scaffold_135_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17565..18725)
DNA (1161bp) protein (387aa)
pheA; bifunctional chorismate mutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Fused chorismate mutase P prephenate dehydratase n=236 Tax=Escherichia RepID=B7MIT7_ECO45
P-protein {ECO:0000313|EMBL:ELJ69652.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L3_131_034G1_scaffold_135_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18975..19316)
DNA (342bp) protein (114aa)
Ribosome-associated inhibitor A n=1346 Tax=Enterobacteriaceae RepID=RAIA_ECO57
raiA; translation inhibitor protein RaiA
Stationary phase translation inhibitor and ribosome stability factor {ECO:0000313|EMBL:EHU08020.1}; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
L3_131_034G1_scaffold_135_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19586..20323)
DNA (738bp) protein (246aa)
Outer membrane protein assembly factor BamD n=1316 Tax=Enterobacteriaceae RepID=BAMD_ECO57
yfiO; outer membrane assembly lipoprotein YfiO
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1116036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2875150.;"
L3_131_034G1_scaffold_135_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20458..21438
DNA (981bp) protein (327aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Pseudouridine synthase n=8 Tax=Escherichia coli RepID=E9UHH8_ECOLX
rluD; 23S rRNA pseudouridine synthase D
L3_131_034G1_scaffold_135_26
Escherichia fergusonii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21435..22166
DNA (732bp) protein (244aa)
Uncharacterized protein n=6 Tax=Escherichia coli RepID=E6ANY4_ECOLX
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=981367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia fergusonii ECD227.;"
yfiH; hypothetical protein
L3_131_034G1_scaffold_135_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22296..24869
DNA (2574bp) protein (858aa)
Chaperone ClpB n=1 Tax=Escherichia coli KTE84 RepID=L4EU10_ECOLX
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1125642 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.13.;"
clpB; protein disaggregation chaperone
Displaying 27 items

View Taxonomy