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L3_131_368G1_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_80_1
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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210..1187
DNA (978bp) protein (326aa)
birA; Bifunctional protein birA (EC:6.3.4.15)
BirA biotin-[acetyl-CoA-carboxylase] ligase region n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y892_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_131_368G1_scaffold_80_2
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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1259..1807
DNA (549bp) protein (183aa)
BioY family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y245_9FIRM
BioY family protein {ECO:0000313|EMBL:CDD30138.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L3_131_368G1_scaffold_80_3
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1860..2102
DNA (243bp) protein (81aa)
PF06107 family protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AFC9_9CLOT
PF06107 family protein {ECO:0000313|EMBL:CCX38031.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_131_368G1_scaffold_80_4
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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2250..3329
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YHS0_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_131_368G1_scaffold_80_5
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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3326..4957
DNA (1632bp) protein (544aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
tRNA threonylcarbamoyl adenosine modification protein Sua5/YciO/YrdC/YwlC family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YA00_9FIRM
tRNA threonylcarbamoyl adenosine modification protein Sua5/YciO/YrdC/YwlC family {ECO:0000313|EMBL:CDD28079.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_131_368G1_scaffold_80_6
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4993..5547
DNA (555bp) protein (185aa)
Transglycosylase SLT domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZ93_9CLOT
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EDO59871.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Lytic transglycosylase catalytic
L3_131_368G1_scaffold_80_7
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5540..6952
DNA (1413bp) protein (471aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
putative aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4Q7_9CLOT
L3_131_368G1_scaffold_80_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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7053..8825
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002ECC4BC
Uncharacterized protein {ECO:0000313|EMBL:EGN46576.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
beta-lactamase
L3_131_368G1_scaffold_80_9
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8878..9312)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FV94_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE18453.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_131_368G1_scaffold_80_10
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9451..10131
DNA (681bp) protein (227aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FUW6_9PROT
L3_131_368G1_scaffold_80_11
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10287..11714
DNA (1428bp) protein (476aa)
Xanthine/uracil permease n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FT16_9PROT
Xanthine/uracil permease {ECO:0000313|EMBL:CDE18449.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
putative xanthine/uracil permease
L3_131_368G1_scaffold_80_12
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11898..12821
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LFD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60523.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
helix-turn-helix type 11 domain-containing protein
L3_131_368G1_scaffold_80_13
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12818..13450
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LFD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60522.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_131_368G1_scaffold_80_14
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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13453..14088
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JXX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36117.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_131_368G1_scaffold_80_15
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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14210..15091
DNA (882bp) protein (294aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YA10_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDD28089.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_131_368G1_scaffold_80_16
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15105..15845
DNA (741bp) protein (247aa)
Putative ATP-binding protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KY85_OSCVS
putative ATP-binding protein
Putative ATP-binding protein {ECO:0000313|EMBL:BAL01089.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_131_368G1_scaffold_80_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15960..16160
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A5A3_9CLOT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
rpmE; ribosomal protein L31
L3_131_368G1_scaffold_80_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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16245..16871
DNA (627bp) protein (209aa)
YigZ family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XWI8_9FIRM
YigZ family protein {ECO:0000313|EMBL:CDD28093.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
conserved hypothetical protein TIGR00257
L3_131_368G1_scaffold_80_19
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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16955..17698
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T7Q2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68225.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_131_368G1_scaffold_80_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17732..18751
DNA (1020bp) protein (340aa)
HD domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A852_9CLOT
HD domain protein {ECO:0000313|EMBL:CCX38039.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
deoxyguanosinetriphosphate triphosphohydrolase
L3_131_368G1_scaffold_80_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18798..20549
DNA (1752bp) protein (584aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N703_9CLOT
L3_131_368G1_scaffold_80_22
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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20618..21712
DNA (1095bp) protein (365aa)
RNA polymerase sigma factor RpoD n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036FB02A
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
L3_131_368G1_scaffold_80_23
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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21733..22149
DNA (417bp) protein (139aa)
Transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YHT4_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDD28101.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
AsnC family transcriptional regulator
L3_131_368G1_scaffold_80_24
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22607..26347
DNA (3741bp) protein (1247aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A5A8_9CLOT
L3_131_368G1_scaffold_80_25
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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26365..29964
DNA (3600bp) protein (1200aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YA31_9FIRM
L3_131_368G1_scaffold_80_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30163..30591
DNA (429bp) protein (143aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H9E8_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
SSU ribosomal protein S12P
L3_131_368G1_scaffold_80_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30762..31232
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Clostridium leptum CAG:27 RepID=R6NHI0_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
SSU ribosomal protein S7P
L3_131_368G1_scaffold_80_28
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31263..33356
DNA (2094bp) protein (698aa)
Elongation factor G n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAI3_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
fusA; Elongation factor G
L3_131_368G1_scaffold_80_29
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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33447..34649
DNA (1203bp) protein (401aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YA39_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_131_368G1_scaffold_80_30
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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34908..35516
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MBZ3_9FIRM
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
Predicted membrane protein
Displaying items 1-30 of 114 in total

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