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L3_131_368G1_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_121_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..1596
DNA (1596bp) protein (532aa)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium breve RepID=F9Y091_BIFBU
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:AHJ21151.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
ATP-binding protein of ABC transporter system
L3_131_368G1_scaffold_121_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1658..2365
DNA (708bp) protein (236aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=5 Tax=Bifidobacterium breve RepID=F6C9I7_BIFBA
Hypothetical protein with short chain dehydrogenase domain
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFE89551.1}; Putative dehydrogenase {ECO:0000313|EMBL:BAQ99972.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_131_368G1_scaffold_121_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2431..3132)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI0002E1B8CD
ATP-binding protein of ABC transporter system
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ABE95669.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_131_368G1_scaffold_121_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3132..3776)
DNA (645bp) protein (215aa)
ABC-type cobalt transport system permease component n=16 Tax=Bifidobacterium RepID=B3DRU7_BIFLD
ABC transporter permease
Cobalt ABC transporter permease {ECO:0000313|EMBL:KEY22594.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_131_368G1_scaffold_121_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4021..5211)
DNA (1191bp) protein (397aa)
Aminotransferase (EC:2.6.1.-)
Aminotransferase, class I/II {ECO:0000313|EMBL:AEF27052.1}; EC=2.6.1.- {ECO:0000313|EMBL:AEF27052.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
aspartate aminotransferase n=1 Tax=Bifidobacterium breve RepID=UPI0002D797D1
L3_131_368G1_scaffold_121_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5407..8436
DNA (3030bp) protein (1010aa)
UvrABC system protein A n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BPH1_BIFBR
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Excinuclease ABC subunit A
L3_131_368G1_scaffold_121_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8593..11007
DNA (2415bp) protein (805aa)
UvrABC system protein C n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DWY1_BIFBR
Excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L3_131_368G1_scaffold_121_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11247..12227
DNA (981bp) protein (327aa)
Shikimate dehydrogenase substrate binding domain protein n=2 Tax=Bifidobacterium breve RepID=U2CQ26_BIFBR
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:ERI86163.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Shikimate 5-dehydrogenase
L3_131_368G1_scaffold_121_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12227..13195
DNA (969bp) protein (323aa)
UPF0042 nucleotide-binding protein HMPREF9228_0870 n=3 Tax=Bifidobacterium breve RepID=F6C9I1_BIFBA
ATP-binding protein (contains P-loop)
Nucleotide-binding protein HMPREF9228_0870 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_131_368G1_scaffold_121_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13352..14302
DNA (951bp) protein (317aa)
Putative sporulation transcription regulator WhiA n=6 Tax=Bifidobacterium breve RepID=F6C9I0_BIFBA
Hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_131_368G1_scaffold_121_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14461..15666
DNA (1206bp) protein (402aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Phosphoglycerate kinase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E1M7_BIFBR
Phosphoglycerate kinase
L3_131_368G1_scaffold_121_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15800..16618
DNA (819bp) protein (273aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Triosephosphate isomerase n=2 Tax=Bifidobacterium breve RepID=U2DWY6_BIFBR
Triosephosphate isomerase
L3_131_368G1_scaffold_121_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16682..16930
DNA (249bp) protein (83aa)
Preprotein translocase subunit n=20 Tax=Bifidobacterium RepID=B3DRW1_BIFLD
Protein translocase subunit secG
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KEY22608.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_131_368G1_scaffold_121_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17022..17972
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L-lactate dehydrogenase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BPI0_BIFBR
L-lactate dehydrogenase
L3_131_368G1_scaffold_121_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17969..18820
DNA (852bp) protein (284aa)
Cof-like hydrolase n=2 Tax=Bifidobacterium breve RepID=D4BPI1_BIFBR
Cof-like hydrolase {ECO:0000313|EMBL:EPD75075.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Hydrolase, HAD superfamily
L3_131_368G1_scaffold_121_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18939..20474
DNA (1536bp) protein (512aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFE89569.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFE89569.1};; Putative aminotransferase {ECO:0000313|EMBL:BAQ99987.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Aminotransferase, class I/II n=2 Tax=Bifidobacterium breve RepID=D4BPI2_BIFBR
Aminotransferase
L3_131_368G1_scaffold_121_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20913..22097)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZE94_BIFBR
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75073.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_131_368G1_scaffold_121_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22270..23607)
DNA (1338bp) protein (446aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZYD0_BIFBR
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EPD75072.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
brnQ; branched-chain amino acid transport system II carrier protein
L3_131_368G1_scaffold_121_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23953..25056)
DNA (1104bp) protein (368aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Transaldolase n=7 Tax=Bifidobacterium RepID=D6ZUG3_BIFLJ
Transaldolase
L3_131_368G1_scaffold_121_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25130..27238)
DNA (2109bp) protein (703aa)
Transketolase n=2 Tax=Bifidobacterium breve RepID=D4BPI6_BIFBR
Transketolase
Transketolase {ECO:0000313|EMBL:AHJ21169.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_131_368G1_scaffold_121_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27499..28596
DNA (1098bp) protein (366aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AFN5_BIFBR
hrcA; Heat-inducible transcription repressor hrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_131_368G1_scaffold_121_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28651..29796
DNA (1146bp) protein (382aa)
Chaperone protein DnaJ n=2 Tax=Bifidobacterium breve RepID=F9Y0B1_BIFBU
dnaJ2; Chaperone protein dnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1685 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve.;"
L3_131_368G1_scaffold_121_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29940..30731)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZF42_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75011.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Fructosamine kinase family protein
L3_131_368G1_scaffold_121_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30882..31766
DNA (885bp) protein (295aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Undecaprenyl-diphosphatase n=6 Tax=Bifidobacterium breve RepID=F9Y0B3_BIFBU
Bacitracin resistance protein (Putative undecaprenol kinase)
L3_131_368G1_scaffold_121_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31917..32717)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C9G5_BIFBA
PAC2 family protein
Uncharacterized protein {ECO:0000313|EMBL:AEF27508.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_131_368G1_scaffold_121_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33571..35604
DNA (2034bp) protein (678aa)
thrS; threonine--tRNA ligase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Threonine--tRNA ligase n=3 Tax=Bifidobacterium breve RepID=F6C9G4_BIFBA
L3_131_368G1_scaffold_121_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35616..36200
DNA (585bp) protein (195aa)
Histidine triad (HIT) protein n=4 Tax=Bifidobacterium RepID=B7GR14_BIFLS
hypothetical protein
Histidine triad domain protein {ECO:0000313|EMBL:ERI86022.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_131_368G1_scaffold_121_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36340..37095
DNA (756bp) protein (252aa)
Probable transcriptional regulatory protein Blon_1155/BLIJ_1182 n=7 Tax=Bifidobacterium RepID=Y1155_BIFLS
Conserved hypothetical protein with DUF28
Probable transcriptional regulatory protein HMPREF1587_01920 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_131_368G1_scaffold_121_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37101..37685
DNA (585bp) protein (195aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Crossover junction endodeoxyribonuclease RuvC n=6 Tax=Bifidobacterium breve RepID=F6C9G1_BIFBA
Crossover junction endodeoxyribonuclease ruvC
L3_131_368G1_scaffold_121_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37729..38355
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AFG9_BIFBR
ruvA; Holliday junction DNA helicase ruvA
Displaying items 1-30 of 126 in total

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