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L3_131_368G1_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_238_1
unknown

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1..279
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P0P6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL38263.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_131_368G1_scaffold_238_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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387..707
DNA (321bp) protein (107aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
mRNA interferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JA43_9FIRM
Growth inhibitor
L3_131_368G1_scaffold_238_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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849..2675
DNA (1827bp) protein (609aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JA41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78334.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_131_368G1_scaffold_238_4
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2906..3868
DNA (963bp) protein (321aa)
Agmatinase n=1 Tax=Clostridium sp. CAG:167 RepID=R5VUH0_9CLOT
Agmatinase {ECO:0000313|EMBL:CCZ91449.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
agmatinase
L3_131_368G1_scaffold_238_5
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3861..4823
DNA (963bp) protein (321aa)
agmatinase (EC:3.5.3.11)
Agmatinase n=1 Tax=Clostridium sp. CAG:167 RepID=R5W6S2_9CLOT
Agmatinase {ECO:0000313|EMBL:CCZ91451.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
L3_131_368G1_scaffold_238_6
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4845..5759
DNA (915bp) protein (305aa)
putative agmatinase (EC:3.5.3.11)
Agmatinase n=1 Tax=Clostridium sp. CAG:167 RepID=R5VUH0_9CLOT
Agmatinase {ECO:0000313|EMBL:CCZ91449.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
L3_131_368G1_scaffold_238_7
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5792..7189
DNA (1398bp) protein (466aa)
MATE efflux family protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z8B6_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CCQ94251.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
MATE efflux family protein
L3_131_368G1_scaffold_238_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7520..8512
DNA (993bp) protein (331aa)
oppB; Oligopeptide ABC transporter membrane component (EC:3.6.3.23)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67041.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_131_368G1_scaffold_238_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8526..9428
DNA (903bp) protein (301aa)
oppC; Oligopeptide ABC transporter membrane component (EC:3.6.3.23)
Oligopeptide ABC transporter membrane component {ECO:0000313|EMBL:CCO05584.1}; EC=3.6.3.23 {ECO:0000313|EMBL:CCO05584.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4E1_9FIRM
L3_131_368G1_scaffold_238_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9448..10449
DNA (1002bp) protein (334aa)
oppD; Oligopeptide ABC transporter, ATPase component (EC:3.6.3.23)
Oligopeptide ABC transporter, ATPase component {ECO:0000313|EMBL:CCO05583.1}; EC=3.6.3.23 {ECO:0000313|EMBL:CCO05583.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBI7_9FIRM
L3_131_368G1_scaffold_238_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10442..11437
DNA (996bp) protein (332aa)
oppF; Oligopeptide ABC transporter, ATPase component (EC:3.6.3.23)
Oligopeptide ABC transporter, ATPase component {ECO:0000313|EMBL:CCO05582.1}; EC=3.6.3.23 {ECO:0000313|EMBL:CCO05582.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0U7_9FIRM
L3_131_368G1_scaffold_238_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11470..13092
DNA (1623bp) protein (541aa)
oppA; Oligopeptide-binding protein OppA (EC:3.6.3.23)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67037.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_131_368G1_scaffold_238_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13147..14832
DNA (1686bp) protein (562aa)
Ammonium transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGR5_9FIRM
amt1; Ammonium transporter
Ammonium transporter {ECO:0000313|EMBL:CCO05580.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_14
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14862..15698
DNA (837bp) protein (279aa)
Transcriptional regulator, MerR family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR69_9FIRM
MerR family transcriptional regulator {ECO:0000313|EMBL:KJS49380.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
hypothetical protein
L3_131_368G1_scaffold_238_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15768..15947)
DNA (180bp) protein (60aa)
Transposase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T263_9FIRM
Transposase {ECO:0000313|EMBL:CDC66295.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_131_368G1_scaffold_238_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16052..18781)
DNA (2730bp) protein (910aa)
Mannan endo-1 4-beta-mannosidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH0_9FIRM
Carbohydrate-Binding Module Family 35 protein / Glycoside Hydrolase Family 26 protein
Carbohydrate-Binding Module Family 35 protein / Glycoside Hydrolase Family 26 protein {ECO:0000313|EMBL:CCO04218.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18920..19927)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZQ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04219.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20609..22771
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U793_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66677.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_131_368G1_scaffold_238_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22859..24820
DNA (1962bp) protein (654aa)
Endoglucanase {ECO:0000256|RuleBase:RU361153}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361153};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Cellulase (Glycosyl hydrolase family 5) n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL4_9FIRM
Carbohydrate-Binding Module Family 2 protein / Glycoside Hydrolase Family 5 protein
L3_131_368G1_scaffold_238_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24881..25750)
DNA (870bp) protein (290aa)
EDD domain protein DegV family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3A3_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04222.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25849..28203)
DNA (2355bp) protein (785aa)
Putative negative regulator of genetic competence ClpC/MecB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAG5_9FIRM
Putative ATP-dependent Clp protease ATP-binding subunit {ECO:0000313|EMBL:CCO04223.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Putative ATP-dependent Clp protease ATP-binding subunit
L3_131_368G1_scaffold_238_22
unknown

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comp(28430..28621)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_131_368G1_scaffold_238_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28640..30214)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U790_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66672.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_131_368G1_scaffold_238_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30349..31383
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66671.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_131_368G1_scaffold_238_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31485..32465)
DNA (981bp) protein (327aa)
vanY1; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCO04227.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCO04227.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus albus 8 RepID=E9SD68_RUMAL
L3_131_368G1_scaffold_238_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32559..33563)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAF9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04228.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33547..34308)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U785_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04229.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_131_368G1_scaffold_238_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34370..34789
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFK7_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC66666.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_131_368G1_scaffold_238_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34944..36983)
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T396_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66665.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_131_368G1_scaffold_238_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37187..37561)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAF4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04232.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 68 in total

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