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L3_131_368G1_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_305_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..179)
DNA (177bp) protein (59aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium RepID=B6FUS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23444.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Transcriptional regulator, TetR family
L3_131_368G1_scaffold_305_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

341..2443
DNA (2103bp) protein (701aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80209.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_131_368G1_scaffold_305_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2424..4679
DNA (2256bp) protein (752aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUS9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80210.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
X-X-X-Leu-X-X-Gly heptad repeats
L3_131_368G1_scaffold_305_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4847..5416)
DNA (570bp) protein (190aa)
Guanosine polyphosphate pyrophosphohydrolases/synthetases (EC:3.1.7.2)
HD domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUT0_9CLOT
HD domain protein {ECO:0000313|EMBL:EEA80211.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_131_368G1_scaffold_305_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5610..5924)
DNA (315bp) protein (105aa)
Transcriptional regulator, ArsR family n=2 Tax=Clostridium RepID=B6FUT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23440.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator
L3_131_368G1_scaffold_305_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5988..6407)
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23439.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted DNA-binding protein with PD1-like DNA-binding motif
L3_131_368G1_scaffold_305_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6422..6742)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23438.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted dehydrogenases and related proteins
L3_131_368G1_scaffold_305_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6681..7286)
DNA (606bp) protein (202aa)
Oxidoreductase, NAD-binding domain protein n=2 Tax=Clostridium RepID=B6FUT4_9CLOT
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEA80215.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted dehydrogenases and related proteins
L3_131_368G1_scaffold_305_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7283..8011)
DNA (729bp) protein (243aa)
Putative phage head-tail adaptor n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUT5_9CLOT
Putative phage head-tail adaptor {ECO:0000313|EMBL:EEA80216.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulators
L3_131_368G1_scaffold_305_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8080..8277)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PIR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80217.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SIR2; NAD-dependent protein deacetylase, SIR2 family
L3_131_368G1_scaffold_305_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8293..9987)
DNA (1695bp) protein (565aa)
Resolvase, N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSJ0_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFB74337.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
recombinase
L3_131_368G1_scaffold_305_12
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10857..11282)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Dorea sp. 5-2 RepID=R9NB04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS77202.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_131_368G1_scaffold_305_13
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11820..12308)
DNA (489bp) protein (163aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6H2_9CLOT
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFE14160.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_131_368G1_scaffold_305_14
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12341..12784)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48283.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Mn-dependent transcriptional regulator
L3_131_368G1_scaffold_305_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12820..14538)
DNA (1719bp) protein (573aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CB67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33888.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_131_368G1_scaffold_305_16
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14532..16322)
DNA (1791bp) protein (597aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B866_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29546.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
ABC-type multidrug transport system, ATPase and permease components
L3_131_368G1_scaffold_305_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16494..18167)
DNA (1674bp) protein (558aa)
Nickel ABC transporter, nickel/metallophore periplasmic binding protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CB65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55536.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ABC-type dipeptide transport system, periplasmic component
L3_131_368G1_scaffold_305_18
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18198..18962)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B868_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29548.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
ABC transporter
L3_131_368G1_scaffold_305_19
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18959..19738)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B869_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29549.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_131_368G1_scaffold_305_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19728..20546)
DNA (819bp) protein (273aa)
ABC transporter, permease protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYV8_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EDM98607.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_131_368G1_scaffold_305_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20543..21502)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CB61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33882.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_131_368G1_scaffold_305_22
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21693..22661)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KP65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS45282.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
transcriptional regulator, AraC family
L3_131_368G1_scaffold_305_23
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22956..24362)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2G4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48276.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Relaxase/mobilization nuclease family protein
L3_131_368G1_scaffold_305_24
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24535..24963)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48273.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_131_368G1_scaffold_305_25
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24989..25279)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AB47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS79555.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_131_368G1_scaffold_305_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25364..25708)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2F9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48271.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_131_368G1_scaffold_305_27
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25705..26400)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2F8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48270.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_131_368G1_scaffold_305_28
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26400..27131)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LDB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET61345.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_131_368G1_scaffold_305_29
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27146..27778)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48268.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_131_368G1_scaffold_305_30
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27941..28312)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A2V3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ23682.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
Displaying items 1-30 of 105 in total

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