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L3_131_368G1_scaffold_1169

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_1169_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..3657)
DNA (3657bp) protein (1219aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75733.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
type 1 dockerin
L3_131_368G1_scaffold_1169_2
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3828..4793)
DNA (966bp) protein (322aa)
translation initiation factor 2 n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B45623
Uncharacterized protein {ECO:0000313|EMBL:ETP71269.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
hypothetical protein
L3_131_368G1_scaffold_1169_3
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4800..5255)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B40B42
Uncharacterized protein {ECO:0000313|EMBL:EMZ20461.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_131_368G1_scaffold_1169_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5408..7870)
DNA (2463bp) protein (821aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPK1_9FIRM
L3_131_368G1_scaffold_1169_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8195..11350)
DNA (3156bp) protein (1052aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGU1_9FIRM
L3_131_368G1_scaffold_1169_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12237..13256
DNA (1020bp) protein (340aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75747.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_131_368G1_scaffold_1169_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13227..14186)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75748.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Inhibitor of the KinA pathway to sporulation, predicted exonuclease
L3_131_368G1_scaffold_1169_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14247..15371)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75749.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized Fe-S center protein
L3_131_368G1_scaffold_1169_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15461..15706)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75750.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_131_368G1_scaffold_1169_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15940..17622)
DNA (1683bp) protein (561aa)
Phosphomannomutase (EC:5.4.2.8)
phosphoglucomutase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031D6ABE
Uncharacterized protein {ECO:0000313|EMBL:EES75751.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_131_368G1_scaffold_1169_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17723..18610)
DNA (888bp) protein (296aa)
Oligopeptide ABC transporter n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CD82_9FIRM
Oligopeptide ABC transporter {ECO:0000313|EMBL:CDD75900.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_131_368G1_scaffold_1169_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18607..19611)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75753.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_131_368G1_scaffold_1169_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19608..20522)
DNA (915bp) protein (305aa)
Oligopeptide/dipeptide ABC transporter n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CEZ1_9FIRM
Oligopeptide/dipeptide ABC transporter {ECO:0000313|EMBL:CDD75898.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_131_368G1_scaffold_1169_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20515..21528)
DNA (1014bp) protein (338aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGV1_9FIRM
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EES75755.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_131_368G1_scaffold_1169_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21675..23216)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGV2_9FIRM
Oligopeptide ABC transporter {ECO:0000313|EMBL:CDD76595.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type dipeptide transport system, periplasmic component
L3_131_368G1_scaffold_1169_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23491..25527)
DNA (2037bp) protein (679aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=2 Tax=Ruminococcus RepID=C6JGV3_9FIRM
L3_131_368G1_scaffold_1169_17
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25497..25670)
DNA (174bp) protein (58aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
ATP synthase subunit beta n=2 Tax=Lachnospiraceae RepID=R6G889_9FIRM
L3_131_368G1_scaffold_1169_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25838..26320)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=2 Tax=Ruminococcus RepID=C6JGV4_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transcription elongation factor GreA
L3_131_368G1_scaffold_1169_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26546..27553)
DNA (1008bp) protein (336aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tRNA-dihydrouridine synthase n=2 Tax=Ruminococcus RepID=C6JGV5_9FIRM
tRNA-U20-dihydrouridine synthase
L3_131_368G1_scaffold_1169_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27558..27923)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79746.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_131_368G1_scaffold_1169_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27962..28765)
DNA (804bp) protein (268aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPA6_9FIRM
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase {ECO:0000313|EMBL:CDD79745.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_131_368G1_scaffold_1169_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28765..29766)
DNA (1002bp) protein (334aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=2 Tax=Ruminococcus RepID=C6JGV8_9FIRM
L3_131_368G1_scaffold_1169_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29803..30744)
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75763.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Membrane protease subunits, stomatin/prohibitin homologs
L3_131_368G1_scaffold_1169_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30747..31181)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79742.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Membrane protein implicated in regulation of membrane protease activity
L3_131_368G1_scaffold_1169_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31398..31871)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75765.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
rRNA methylases
L3_131_368G1_scaffold_1169_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31881..32534)
DNA (654bp) protein (218aa)
TrkA-N domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQN6_9FIRM
TrkA-N domain-containing protein {ECO:0000313|EMBL:CDD79738.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
K+ transport systems, NAD-binding component
L3_131_368G1_scaffold_1169_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32609..34003)
DNA (1395bp) protein (465aa)
H(+)-transporting two-sector ATPase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ30_9FIRM
H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:CDD79737.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Trk-type K+ transport systems, membrane components
L3_131_368G1_scaffold_1169_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34007..35005)
DNA (999bp) protein (333aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=2 Tax=Ruminococcus RepID=C6JGW4_9FIRM
L3_131_368G1_scaffold_1169_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35078..38545)
DNA (3468bp) protein (1156aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CP95_9FIRM
L3_131_368G1_scaffold_1169_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38604..39443)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75770.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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