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L3_131_368G1_scaffold_730

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_730_1
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..496
DNA (495bp) protein (165aa)
Sigma-54 interaction domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S7_9FIRM
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EEF69000.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
membrane protein
L3_131_368G1_scaffold_730_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

624..1043
DNA (420bp) protein (140aa)
Phosphotransferase system, mannose/fructose-specific component IIA (EC:2.7.1.69)
PTS system fructose IIA component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S6_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:EEF69027.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_3
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1037..1510
DNA (474bp) protein (158aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
PTS system sorbose subfamily IIB component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S5_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EEF69026.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_4
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1526..2308
DNA (783bp) protein (261aa)
PTS system sorbose-specific iic component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S4_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEF69025.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_131_368G1_scaffold_730_5
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2301..3122
DNA (822bp) protein (274aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S3_9FIRM
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EEF69024.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
L3_131_368G1_scaffold_730_6
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3168..4238
DNA (1071bp) protein (357aa)
SIS domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S2_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEF69023.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4337..5698
DNA (1362bp) protein (454aa)
MATE efflux family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4S1_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEF69022.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
matE; MATE efflux family protein
L3_131_368G1_scaffold_730_8
unknown

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5859..6002
DNA (144bp) protein (48aa)

This feature has no annotations

L3_131_368G1_scaffold_730_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6281..7750
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF69020.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Predicted transcriptional regulators
L3_131_368G1_scaffold_730_10
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7952..9181
DNA (1230bp) protein (410aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Serine hydroxymethyltransferase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R7_9FIRM
glyA; glycine hydroxymethyltransferase
L3_131_368G1_scaffold_730_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9315..10655)
DNA (1341bp) protein (447aa)
Uncharacterized protein (Fragment) n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF69017.1}; Flags: Fragment;; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_12
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10661..11377)
DNA (717bp) protein (239aa)
Response regulator receiver domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEF69036.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12243..12686
DNA (444bp) protein (148aa)
bglP5; PTS system beta-glucoside-specific EIIBCA component BglP (EC:2.7.1.69 2.7.1.-)
PTS system, glucose subfamily, IIA component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R1_9FIRM
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EEF69033.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_14
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12714..13541
DNA (828bp) protein (276aa)
Transcription antiterminator LicT n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4R0_9FIRM
Transcription antiterminator LicT {ECO:0000313|EMBL:EEF69032.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
BglG family transcriptional antiterminator
L3_131_368G1_scaffold_730_15
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13895..15283
DNA (1389bp) protein (463aa)
Protein-N(pi)-phosphohistidine--sugar phosphotransferase (EC:2.7.1.69)
Phosphotransferase system, EIIC n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q9_9FIRM
Phosphotransferase system, EIIC {ECO:0000313|EMBL:EEF69031.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_16
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15404..16852
DNA (1449bp) protein (483aa)
MlrC domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q8_9FIRM
MlrC domain protein {ECO:0000313|EMBL:EEF69030.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_17
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16924..17793)
DNA (870bp) protein (290aa)
SIS domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q7_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEF69029.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
rpiR; HTH-type transcriptional regulator
L3_131_368G1_scaffold_730_18
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17885..19270
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y969_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF67453.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_19
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19283..20734
DNA (1452bp) protein (484aa)
MlrC domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q4_9FIRM
MlrC domain protein {ECO:0000313|EMBL:EEF69040.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
microcystin LR degradation protein MlrC-like protein
L3_131_368G1_scaffold_730_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20746..22194
DNA (1449bp) protein (483aa)
MlrC domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q3_9FIRM
MlrC domain protein {ECO:0000313|EMBL:EEF69039.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_21
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22249..23706
DNA (1458bp) protein (486aa)
MlrC domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q3_9FIRM
MlrC domain protein {ECO:0000313|EMBL:EEF69039.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23750..24808
DNA (1059bp) protein (353aa)
Putative membrane protein AbrB n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Q0_9FIRM
Putative membrane protein AbrB {ECO:0000313|EMBL:EEF69059.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_730_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24828..26015
DNA (1188bp) protein (396aa)
Transporter, major facilitator family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4P9_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEF69058.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
ProP; major facilitator superfamily permease
L3_131_368G1_scaffold_730_24
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26131..27540
DNA (1410bp) protein (470aa)
beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4P8_9FIRM
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEF69057.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_25
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

27544..28956
DNA (1413bp) protein (471aa)
Beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4P7_9FIRM
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEF69056.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_730_26
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

29053..29985
DNA (933bp) protein (311aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4P6_9FIRM
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEF69055.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
transporter, auxin efflux carrier (AEC) family
L3_131_368G1_scaffold_730_27
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

29999..30700
DNA (702bp) protein (234aa)
MATE efflux family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4P5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEF69054.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
MATE efflux family protein
L3_131_368G1_scaffold_730_28
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30719..31936)
DNA (1218bp) protein (406aa)
Resolvase, N-terminal domain protein n=2 Tax=Firmicutes RepID=D4CAH2_9CLOT
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFE13247.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Site-specific recombinases, DNA invertase Pin homologs
Displaying 28 items

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