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L3_131_368G1_scaffold_809

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_809_1
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2..967)
DNA (966bp) protein (322aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
acetate kinase A/propionate kinase 2 (EC:2.7.2.1)
Acetate kinase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL9_9FIRM
L3_131_368G1_scaffold_809_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(980..1306)
DNA (327bp) protein (109aa)
UPF0122 protein HOLDEFILI_03579 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL8_9FIRM
UPF0122 protein HOLDEFILI_03579 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
DNA-binding protein
L3_131_368G1_scaffold_809_3
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1296..2267)
DNA (972bp) protein (324aa)
Signal recognition particle receptor FtsY n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL7_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
signal recognition particle-docking protein FtsY
L3_131_368G1_scaffold_809_4
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2264..5203)
DNA (2940bp) protein (980aa)
Chromosome partition protein Smc n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL6_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
chromosome segregation protein SMC
L3_131_368G1_scaffold_809_5
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5439..5801
DNA (363bp) protein (121aa)
LrgA family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL5_9FIRM
LrgA family protein {ECO:0000313|EMBL:EEF66275.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Putative effector of murein hydrolase LrgA
L3_131_368G1_scaffold_809_6
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5798..6475
DNA (678bp) protein (226aa)
Putative TIGR00659 family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCL4_9FIRM
Putative TIGR00659 family protein {ECO:0000313|EMBL:EEF66273.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
LrgB family protein
L3_131_368G1_scaffold_809_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6539..7954)
DNA (1416bp) protein (472aa)
Amidase (Fragment) n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI6_9FIRM
Amidase {ECO:0000313|EMBL:EEF66311.1}; Flags: Fragment;; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
amidase
L3_131_368G1_scaffold_809_8
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8121..10415)
DNA (2295bp) protein (765aa)
Peptidase, U32 family {ECO:0000313|EMBL:EEF66310.1}; EC=3.4.-.- {ECO:0000313|EMBL:EEF66310.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Peptidase, U32 family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI5_9FIRM
peptidase U32
L3_131_368G1_scaffold_809_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10412..10618)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66309.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_809_10
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10652..11146)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66308.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Mug; G:T/U mismatch-specific DNA glycosylase
L3_131_368G1_scaffold_809_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11143..12447)
DNA (1305bp) protein (435aa)
L-serine ammonia-lyase (EC:4.3.1.17)
Putative L-serine ammonia-lyase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI2_9FIRM
Putative L-serine ammonia-lyase {ECO:0000313|EMBL:EEF66307.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_809_12
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12530..13489)
DNA (960bp) protein (320aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EEF66322.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEF66322.1};; Flags: Fragment;; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
DNA polymerase III, delta subunit (Fragment) n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI1_9FIRM
DNA polymerase III subunit delta
L3_131_368G1_scaffold_809_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13498..15435)
DNA (1938bp) protein (646aa)
Metallo-beta-lactamase domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCI0_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEF66321.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
comEC; ComE operon protein 3
L3_131_368G1_scaffold_809_14
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15426..15899)
DNA (474bp) protein (158aa)
ComEA protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH8_9FIRM
ComEA protein {ECO:0000313|EMBL:EEF66319.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
competence ComEA helix-hairpin-helix repeat region domain protein
L3_131_368G1_scaffold_809_15
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15950..16420)
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH7_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
greA; transcription elongation factor GreA
L3_131_368G1_scaffold_809_16
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16448..17077)
DNA (630bp) protein (210aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Uridine kinase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH6_9FIRM
udk; uridine kinase
L3_131_368G1_scaffold_809_17
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17105..18187)
DNA (1083bp) protein (361aa)
YceG family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH5_9FIRM
YceG family protein {ECO:0000313|EMBL:EEF66316.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_809_18
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18168..18434)
DNA (267bp) protein (89aa)
UPF0473 protein HOLDEFILI_03535 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH4_9FIRM
UPF0473 protein HOLDEFILI_03535 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_809_19
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18486..18905)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Putative Holliday junction resolvase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH3_9FIRM
Holliday junction resolvase YqgF
L3_131_368G1_scaffold_809_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18905..19162)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66313.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_131_368G1_scaffold_809_21
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(19219..21840)
DNA (2622bp) protein (874aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1AZL1_9FIRM
L3_131_368G1_scaffold_809_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22077..23144)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66331.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
permease
L3_131_368G1_scaffold_809_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23171..23326)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66330.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_809_24
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23378..25567)
DNA (2190bp) protein (730aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Helicase, RecD/TraA family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG7_9FIRM
RecD/TraA family helicase
L3_131_368G1_scaffold_809_25
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25584..26282)
DNA (699bp) protein (233aa)
CAAX amino terminal protease family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG6_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EEF66328.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
putative metal-dependent membrane protease
L3_131_368G1_scaffold_809_26
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26279..27424)
DNA (1146bp) protein (382aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG5_9FIRM
L3_131_368G1_scaffold_809_27
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27484..27915)
DNA (432bp) protein (144aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG4_9FIRM
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EEF66326.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
transcriptional regulator Spx
L3_131_368G1_scaffold_809_28
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28361..28771
DNA (411bp) protein (137aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG3_9FIRM
Displaying 28 items

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