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L3_131_368G1_scaffold_1284

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_131_368G1_scaffold_1284_1
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2..3496)
DNA (3495bp) protein (1165aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
pyruvate-flavodoxin oxidoreductase (EC:1.-.-.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B7_9FIRM
L3_131_368G1_scaffold_1284_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3703..5106)
DNA (1404bp) protein (468aa)
MATE efflux family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEF68123.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Na+driven multidrug efflux pump
L3_131_368G1_scaffold_1284_3
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5323..6360)
DNA (1038bp) protein (346aa)
Aminopeptidase, M42 family (EC:3.4.11.-)
M42 glutamyl aminopeptidase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B4_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EEF68122.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_1284_4
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6380..6889)
DNA (510bp) protein (170aa)
Bifunctional protein PyrR n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B3_9FIRM
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
uracil phosphoribosyltransferase
L3_131_368G1_scaffold_1284_5
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6908..8125)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF68120.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
conserved hypothetical protein
L3_131_368G1_scaffold_1284_6
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8333..8779
DNA (447bp) protein (149aa)
Sporulation initiation factor Spo0A domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B1_9FIRM
Sporulation initiation factor Spo0A domain protein {ECO:0000313|EMBL:EEF68119.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
sporulation transcriptional activator Spo0A
L3_131_368G1_scaffold_1284_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9022..10338)
DNA (1317bp) protein (439aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7B0_9FIRM
L3_131_368G1_scaffold_1284_8
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10340..11302)
DNA (963bp) protein (321aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A9_9FIRM
L3_131_368G1_scaffold_1284_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11320..12759)
DNA (1440bp) protein (480aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A8_9FIRM
MurE; UDP-N-acetylmuramyl tripeptide synthase
L3_131_368G1_scaffold_1284_10
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12710..14626)
DNA (1917bp) protein (639aa)
Putative stage V sporulation protein D n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A7_9FIRM
Putative stage V sporulation protein D {ECO:0000313|EMBL:EEF68115.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
spoVD; stage V sporulation protein SpoVD
L3_131_368G1_scaffold_1284_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14705..16888)
DNA (2184bp) protein (728aa)
Penicillin-binding protein 2B (Fragment) n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A5_9FIRM
Penicillin-binding protein 2B {ECO:0000313|EMBL:EEF68157.1}; Flags: Fragment;; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
penicillin-binding protein 2B
L3_131_368G1_scaffold_1284_12
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16894..17196)
DNA (303bp) protein (101aa)
Putative cell division protein FtsL n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A4_9FIRM
Putative cell division protein FtsL {ECO:0000313|EMBL:EEF68156.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_131_368G1_scaffold_1284_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17201..18139)
DNA (939bp) protein (313aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A3_9FIRM
mraW; S-adenosyl-methyltransferase MraW
L3_131_368G1_scaffold_1284_14
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18136..18222)
DNA (87bp) protein (29aa)
Protein MraZ n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7A2_9FIRM
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Displaying 14 items

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