ggKbase home page

L3_132_000M1_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_104_1
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..112
DNA (111bp) protein (37aa)
Helicase C-terminal domain protein n=2 Tax=Bacteroides dorei RepID=G1ULL8_9BACE
hypothetical protein
Helicase {ECO:0000313|EMBL:AII63543.1}; TaxID=357276 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei.;"
L3_132_000M1_scaffold_104_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(228..473)
DNA (246bp) protein (82aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=A6L5Y0_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS01662.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_132_000M1_scaffold_104_3
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(475..1215)
DNA (741bp) protein (247aa)
Probable transcriptional regulatory protein BVU_3469 n=13 Tax=Bacteroides RepID=Y3469_BACV8
transcriptional regulator
Probable transcriptional regulatory protein BN728_02130 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_132_000M1_scaffold_104_4
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(1249..3711)
DNA (2463bp) protein (821aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
Phenylalanine--tRNA ligase beta subunit n=5 Tax=Bacteroides RepID=A6L5X8_BACV8
L3_132_000M1_scaffold_104_5
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3865..5421)
DNA (1557bp) protein (519aa)
Replicative DNA helicase {ECO:0000313|EMBL:EEO46336.1}; EC=3.6.1.- {ECO:0000313|EMBL:EEO46336.1};; TaxID=556260 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei 5_1_36/D4.;"
DNA helicase n=9 Tax=Bacteroides RepID=A6L5X7_BACV8
DNA helicase
L3_132_000M1_scaffold_104_6
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5683..6510
DNA (828bp) protein (276aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=3 Tax=Bacteroides RepID=I8VXP5_9BACE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_132_000M1_scaffold_104_7
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6585..9464)
DNA (2880bp) protein (960aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C6Z230_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EET14939.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
hypothetical protein
L3_132_000M1_scaffold_104_8
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9464..10213)
DNA (750bp) protein (250aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
UvrD/REP helicase n=3 Tax=root RepID=C6Z231_9BACE
ATP-dependent helicase
L3_132_000M1_scaffold_104_9
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10183..12576)
DNA (2394bp) protein (798aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
ATP-dependent helicase n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6L5X4_BACV8
ATP-dependent helicase
L3_132_000M1_scaffold_104_10
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12657..13958)
DNA (1302bp) protein (434aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
Uncharacterized protein n=1 Tax=Bacteroides vulgatus CL09T03C04 RepID=I8ZIR8_BACVU
two-component system sensor histidine kinase
L3_132_000M1_scaffold_104_11
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14074..15414)
DNA (1341bp) protein (447aa)
Response regulator receiver domain protein n=4 Tax=Bacteroides RepID=D4V4W1_BACVU
Putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein {ECO:0000313|EMBL:EET14942.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
two-component system response regulator
L3_132_000M1_scaffold_104_12
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15451..17220)
DNA (1770bp) protein (590aa)
Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus PC510 RepID=D4V4W2_BACVU
Putative uncharacterized protein {ECO:0000313|EMBL:EFG19079.1}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
hypothetical protein
L3_132_000M1_scaffold_104_13
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17224..17424)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 4_3_47FAA RepID=G1UMD1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS31459.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_132_000M1_scaffold_104_14
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17430..17969
DNA (540bp) protein (180aa)
Glutathione peroxidase n=3 Tax=Bacteroides vulgatus RepID=A6L5X0_BACV8
glutathione peroxidase
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
L3_132_000M1_scaffold_104_15
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18000..18227)
DNA (228bp) protein (76aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=C6Z236_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOS10324.1}; TaxID=1235788 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis dnLKV3.;"
hypothetical protein
L3_132_000M1_scaffold_104_16
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18224..18697)
DNA (474bp) protein (158aa)
Uncharacterized protein n=8 Tax=Bacteroides RepID=A6L5W9_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS01673.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_132_000M1_scaffold_104_17
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18694..19122)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus CAG:6 RepID=R7P0M7_9BACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF17813.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_132_000M1_scaffold_104_18
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19433..19849
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus CAG:6 RepID=R7NWP0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDF17814.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
hypothetical protein
L3_132_000M1_scaffold_104_19
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20843..21391
DNA (549bp) protein (183aa)
Transcription termination/antitermination factor NusG n=4 Tax=Bacteroides RepID=C6Z241_9BACE
transcriptional regulator UpxY-like protein
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:EET14950.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
L3_132_000M1_scaffold_104_20
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21474..21857
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HCD6_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EOS01677.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
hypothetical protein
L3_132_000M1_scaffold_104_21
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22585..24135
DNA (1551bp) protein (517aa)
polysaccharide biosynthesis protein n=1 Tax=Alistipes onderdonkii RepID=UPI00035C2C47
Uncharacterized protein {ECO:0000313|EMBL:CDB48560.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hypothetical protein
L3_132_000M1_scaffold_104_22
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24219..25139
DNA (921bp) protein (307aa)
Glycosyltransferase, group 2 family protein n=2 Tax=Bacteroidales RepID=D0T9V5_9BACE
Glycosyltransferase family 2 {ECO:0000313|EMBL:CDB49771.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
glycosyl transferase family protein
L3_132_000M1_scaffold_104_23
Bacteroides eggerthii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25141..26040
DNA (900bp) protein (300aa)
Glycosyl transferase family 2 n=1 Tax=Bacteroides eggerthii 1_2_48FAA RepID=E5X3E7_9BACE
Glycosyl transferase family 2 {ECO:0000313|EMBL:EFV28334.1}; TaxID=665953 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides eggerthii 1_2_48FAA.;"
glycosyltransferase
L3_132_000M1_scaffold_104_24
Bacteroides dorei CAG:222, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26031..27269
DNA (1239bp) protein (413aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R6HXY1_9BACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB39154.1}; TaxID=1263042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides dorei CAG:222.;"
L3_132_000M1_scaffold_104_25

Not on your lists

27232..28002
DNA (771bp) protein (257aa)
Polysaccharide biosynthesis protein CpsM(V) n=1 Tax=gut metagenome RepID=J9H977_9ZZZZ
Polysaccharide biosynthesis protein CpsM(V) {ECO:0000313|EMBL:EJX11040.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
hypothetical protein
L3_132_000M1_scaffold_104_26
Paraprevotella xylaniphila, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28137..29054
DNA (918bp) protein (306aa)
Conserved domain protein n=1 Tax=Paraprevotella xylaniphila YIT 11841 RepID=F3QW26_9BACT
Conserved domain protein {ECO:0000313|EMBL:EGG52295.1}; TaxID=762982 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella xylaniphila YIT 11841.;"
hypothetical protein
L3_132_000M1_scaffold_104_27
Bacteroides sp. D1, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29108..29827
DNA (720bp) protein (240aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|SAAS:SAAS00030493};; TaxID=556258 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D1.;"
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Bacteroides RepID=C3QK38_9BACE
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L3_132_000M1_scaffold_104_28
Bacteroides sp. 2_1_22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29835..30854
DNA (1020bp) protein (340aa)
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEZ03235.1}; EC=4.2.1.46 {ECO:0000313|EMBL:EEZ03235.1};; TaxID=469588 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_22.;"
NAD dependent epimerase/dehydratase family protein n=2 Tax=Bacteroides RepID=C3QK39_9BACE
NAD dependent epimerase/dehydratase family protein
L3_132_000M1_scaffold_104_29
Bacteroides dorei CAG:222, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30851..32008
DNA (1158bp) protein (386aa)
CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase n=1 Tax=Bacteroides dorei CAG:222 RepID=R6HVQ1_9BACE
CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:CDB37251.1}; TaxID=1263042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides dorei CAG:222.;"
glycosyl/glycerophosphate transferase
L3_132_000M1_scaffold_104_30
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32012..33097
DNA (1086bp) protein (362aa)
Glycosyltransferase, group 1 family protein n=3 Tax=Bacteroides RepID=C3Q274_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY30658.1}; TaxID=997876 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei CL02T12C06.;"
glycosyl transferase
Displaying items 1-30 of 99 in total

View Taxonomy