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L3_132_000M1_scaffold_435

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_435_1
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(52..444)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=2 Tax=Eubacterium RepID=RS9_EUBR3
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_132_000M1_scaffold_435_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(461..889)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=4 Tax=Eubacterium RepID=RL13_EUBR3
LSU ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_132_000M1_scaffold_435_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1207..2781)
DNA (1575bp) protein (525aa)
Alginate biosynthesis protein AlgI n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI87_EUBR3
alginate biosynthesis protein AlgI
Alginate biosynthesis protein AlgI {ECO:0000313|EMBL:ACR76724.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_435_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2875..4167)
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI88_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76725.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_435_5
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4238..4972)
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TJE6_9FIRM
L3_132_000M1_scaffold_435_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5008..5841)
DNA (834bp) protein (278aa)
Cobalt transport protein n=4 Tax=Eubacterium RepID=C4ZI90_EUBR3
cobalt transport protein
ABC-type cobalt transport system, permease component CbiQ and related transporters {ECO:0000313|EMBL:CBK89921.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_132_000M1_scaffold_435_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5891..6736)
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
ABC-type cobalt transport system, ATPase component n=2 Tax=Eubacterium rectale RepID=C4ZI91_EUBR3
ABC-type cobalt transport system, ATPase component
L3_132_000M1_scaffold_435_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6749..7606)
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
ABC transporter, ATP-binding protein n=4 Tax=Eubacterium RepID=C4ZI92_EUBR3
ABC transporter ATP-binding protein
L3_132_000M1_scaffold_435_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7696..8199)
DNA (504bp) protein (168aa)
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=3 Tax=Eubacterium rectale RepID=C4ZI93_EUBR3
L3_132_000M1_scaffold_435_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8221..9399)
DNA (1179bp) protein (393aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3C7_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:CBK89917.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_132_000M1_scaffold_435_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9399..9881)
DNA (483bp) protein (161aa)
Transcriptional regulatory protein, AsnC family (AsnC) n=4 Tax=Eubacterium RepID=C4ZI95_EUBR3
Transcriptional regulators
Transcriptional regulatory protein, AsnC family (AsnC) {ECO:0000313|EMBL:ACR76732.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_435_12
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9909..10910)
DNA (1002bp) protein (334aa)
Hydrogenase maturation factor n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TWQ7_9FIRM
Hydrogenase maturation factor {ECO:0000313|EMBL:CDC72351.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Hydrogenase maturation factor
L3_132_000M1_scaffold_435_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10947..12569)
DNA (1623bp) protein (541aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI97_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76734.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_435_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12673..12777)
DNA (105bp) protein (35aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6UNG9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK89913.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_132_000M1_scaffold_435_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12843..13436
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHW4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93211.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13437..14207)
DNA (771bp) protein (257aa)
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:CBK89911.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBK89911.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3C1_9FIRM
L3_132_000M1_scaffold_435_17
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14298..16154)
DNA (1857bp) protein (619aa)
Fe-S oxidoreductase (EC:4.-.-.-)
Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TWP7_9FIRM
Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase {ECO:0000313|EMBL:CDC72341.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_132_000M1_scaffold_435_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16223..17341)
DNA (1119bp) protein (373aa)
CAAX amino terminal protease family n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3B9_9FIRM
CAAX amino terminal protease family.
CAAX amino terminal protease family {ECO:0000313|EMBL:CBK89909.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_132_000M1_scaffold_435_19
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17482..17859)
DNA (378bp) protein (126aa)
Transcriptional regulator n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LGT9_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCY76694.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
Predicted transcriptional regulators
L3_132_000M1_scaffold_435_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18072..19112
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHX4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93221.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19172..19894)
DNA (723bp) protein (241aa)
CRISPR-associated protein Cas6 n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHX5_9FIRM
CRISPR-associated protein Cas6
CRISPR-associated endoribonuclease {ECO:0000256|PIRNR:PIRNR005054}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19898..21937)
DNA (2040bp) protein (680aa)
RAMP superfamily n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHX6_9FIRM
RAMP superfamily.
RAMP superfamily {ECO:0000313|EMBL:CBK93223.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21939..22493)
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHX8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93225.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_24
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22483..23790)
DNA (1308bp) protein (436aa)
CRISPR-associated RAMP protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LNT4_9FIRM
CRISPR-associated RAMP protein {ECO:0000313|EMBL:EFU76500.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
L3_132_000M1_scaffold_435_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23796..25952)
DNA (2157bp) protein (719aa)
RAMP superfamily n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHX9_9FIRM
RAMP superfamily.
RAMP superfamily {ECO:0000313|EMBL:CBK93226.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_26
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25954..27459)
DNA (1506bp) protein (502aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHY0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93227.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_132_000M1_scaffold_435_27
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27494..29017)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G055_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91925.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_132_000M1_scaffold_435_28
unknown

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comp(29466..29603)
DNA (138bp) protein (46aa)
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSR0_9FIRM
L3_132_000M1_scaffold_435_29
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29605..30069)
DNA (465bp) protein (155aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1M067_9FIRM
RNA-directed DNA polymerase
L3_132_000M1_scaffold_435_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30083..30700)
DNA (618bp) protein (206aa)
Retron-type reverse transcriptase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHY1_9FIRM
Retron-type reverse transcriptase
Retron-type reverse transcriptase {ECO:0000313|EMBL:CBK93228.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Displaying items 1-30 of 37 in total

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