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L3_132_000M1_scaffold_1200

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_1200_1
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(242..1858)
DNA (1617bp) protein (539aa)
GTPase HflX n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5Y6K1_BILWA
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
small GTP-binding protein
L3_132_000M1_scaffold_1200_2
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1960..2562)
DNA (603bp) protein (201aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3)
Putative uncharacterized protein n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V408_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW44982.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
L3_132_000M1_scaffold_1200_3
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2653..4581)
DNA (1929bp) protein (643aa)
UvrABC system protein C n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V2S5_9DELT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
uvrC; excinuclease ABC, C subunit
L3_132_000M1_scaffold_1200_4
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4937..6334)
DNA (1398bp) protein (466aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Amidophosphoribosyltransferase n=2 Tax=Bilophila RepID=E5YA10_BILWA
amidophosphoribosyltransferase
L3_132_000M1_scaffold_1200_5
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6727..7464)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I8N9_9FIRM
Contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIX15173.1}; TaxID=1429043 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
putative uncharacterized protein
L3_132_000M1_scaffold_1200_6
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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7736..9043
DNA (1308bp) protein (436aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V3X9_9DELT
L3_132_000M1_scaffold_1200_7
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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9040..10911
DNA (1872bp) protein (624aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) RepID=A1V9B2_DESVV
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ADP85181.1}; TaxID=573059 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain RCH1).;"
L3_132_000M1_scaffold_1200_8
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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10914..11429
DNA (516bp) protein (172aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
Peptide deformylase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z0N4_DESAF
Peptide deformylase
L3_132_000M1_scaffold_1200_9
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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11649..12665
DNA (1017bp) protein (339aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Methionyl-tRNA formyltransferase n=2 Tax=Bilophila RepID=E5Y8J8_BILWA
methionyl-tRNA formyltransferase
L3_132_000M1_scaffold_1200_10
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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12643..13998
DNA (1356bp) protein (452aa)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5Y7U5_BILWA
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:EFV43912.2}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Fmu (Sun) domain-containing protein
L3_132_000M1_scaffold_1200_11
RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14174..15562
DNA (1389bp) protein (463aa)
Metallophosphoesterase n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5U1U6_9PLAN
Predicted phosphohydrolases
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated
L3_132_000M1_scaffold_1200_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(15884..16684)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B415D4
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ADQ79288.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying 12 items

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