ggKbase home page

L3_132_000M1_scaffold_629

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_629_1
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(505..2508)
DNA (2004bp) protein (668aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9U5_9ACTN
Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 {ECO:0000313|EMBL:CDA35615.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system fructose subfamily transporter subunit IIC
L3_132_000M1_scaffold_629_2
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2781..3638
DNA (858bp) protein (286aa)
Transcriptional regulator RpiR family n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZMR3_9ACTN
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EBA40396.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
RpiR family transcriptional regulator
L3_132_000M1_scaffold_629_3
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3860..5488)
DNA (1629bp) protein (543aa)
DNA repair protein RecN n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3B2_9ACTN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
DNA replication and repair protein RecN
L3_132_000M1_scaffold_629_4
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5478..6338)
DNA (861bp) protein (287aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7F2_9ACTN
ATP-NAD/AcoX kinase
L3_132_000M1_scaffold_629_5
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6335..7147)
DNA (813bp) protein (271aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGF1_9ACTN
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:CDA35619.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hemolysin A
L3_132_000M1_scaffold_629_6
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7147..7413)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=A4E6P1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40400.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Exonuclease VII small subunit
L3_132_000M1_scaffold_629_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7416..8003)
DNA (588bp) protein (196aa)
N utilization substance protein B homolog n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZMR7_9ACTN
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
NusB antitermination factor
L3_132_000M1_scaffold_629_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8007..8369)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=A4E6P4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40403.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_132_000M1_scaffold_629_9
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8394..8957)
DNA (564bp) protein (188aa)
Elongation factor P n=2 Tax=Collinsella RepID=A4E6P5_9ACTN
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
translation elongation factor P (EF-P)
L3_132_000M1_scaffold_629_10
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9117..10247)
DNA (1131bp) protein (377aa)
Creatinase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGF6_9ACTN
Creatinase {ECO:0000313|EMBL:CDA35624.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
peptidase M24
L3_132_000M1_scaffold_629_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10380..11489)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9V4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73322.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
3-dehydroquinate synthase
L3_132_000M1_scaffold_629_12
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11486..12019)
DNA (534bp) protein (178aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=2 Tax=Collinsella RepID=A4E6P8_9ACTN
L3_132_000M1_scaffold_629_13
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12028..12525)
DNA (498bp) protein (166aa)
HAD phosphatase family IIIA n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3C0_9ACTN
HAD superfamily phosphatase {ECO:0000313|EMBL:KGI73320.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
HAD superfamily phosphatase
L3_132_000M1_scaffold_629_14
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12527..13960)
DNA (1434bp) protein (478aa)
YceG family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z7G2_9ACTN
YceG family protein {ECO:0000313|EMBL:CDA35628.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
aminodeoxychorismate lyase
L3_132_000M1_scaffold_629_15
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13953..14381)
DNA (429bp) protein (143aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Putative Holliday junction resolvase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGG1_9ACTN
Holliday junction resolvase YqgF
L3_132_000M1_scaffold_629_16
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(14399..17056)
DNA (2658bp) protein (886aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q2_9ACTN
L3_132_000M1_scaffold_629_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17209..18618)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40412.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_132_000M1_scaffold_629_18
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18615..19406)
DNA (792bp) protein (264aa)
RNA polymerase sigma factor n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3C3_9ACTN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
RNA polymerase sigma-37 subunit RpsB/SigB
L3_132_000M1_scaffold_629_19
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19408..19785)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40414.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_132_000M1_scaffold_629_20
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19778..20365)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40415.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_132_000M1_scaffold_629_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20466..21815)
DNA (1350bp) protein (450aa)
ATPase, AAA family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q7_9ACTN
ATPase, AAA family {ECO:0000313|EMBL:EBA40416.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
recombination protein MgsA
L3_132_000M1_scaffold_629_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21877..23124)
DNA (1248bp) protein (416aa)
Putative dGTPase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZMS8_9ACTN
Putative dGTPase {ECO:0000313|EMBL:CDA35636.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
metal-dependent phosphohydrolase HD sub domain-containing protein
L3_132_000M1_scaffold_629_23
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23156..23578)
DNA (423bp) protein (141aa)
Peptidase A24 family n=1 Tax=Collinsella sp. CAG:166 RepID=R6A3D0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73310.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
peptidase A24A prepilin type IV
L3_132_000M1_scaffold_629_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23660..24955)
DNA (1296bp) protein (432aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EBA40419.1}; EC=2.4.-.- {ECO:0000313|EMBL:EBA40419.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6R0_9ACTN
family 2 glycosyl transferase
L3_132_000M1_scaffold_629_25
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25038..26051)
DNA (1014bp) protein (338aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Pseudouridine synthase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGG8_9ACTN
RluA family pseudouridine synthase
L3_132_000M1_scaffold_629_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26051..26632)
DNA (582bp) protein (194aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Lipoprotein signal peptidase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6R3_9ACTN
lipoprotein signal peptidase
Displaying 26 items

View Taxonomy