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L3_132_000M1_scaffold_186

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_186_1
unknown

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comp(2..121)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_132_000M1_scaffold_186_2
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(403..1515)
DNA (1113bp) protein (371aa)
UDP-galactopyranose mutase n=1 Tax=Eubacterium sp. CAG:252 RepID=R6L0E3_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:CDB67792.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
UDP-galactopyranose mutase
L3_132_000M1_scaffold_186_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1517..2977)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9WEE1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ59713.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_132_000M1_scaffold_186_4
Streptococcus parasanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3014..4237)
DNA (1224bp) protein (408aa)
UPI0003D6347E related cluster n=1 Tax=unknown RepID=UPI0003D6347E
Uncharacterized protein {ECO:0000313|EMBL:ETJ08071.1}; TaxID=1403947 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus parasanguinis DORA_23_24.;"
wzy; oligosaccharide repeat unit polymerase Wzy
L3_132_000M1_scaffold_186_5
Lactobacillus ruminis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(4392..5120)
DNA (729bp) protein (243aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=525362 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus ruminis ATCC 25644.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=E7FQ45_9LACO
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L3_132_000M1_scaffold_186_6
Eggerthia catenaformis, Eggerthia, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5120..6211)
DNA (1092bp) protein (364aa)
putative glycosyl transferase (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Eggerthia catenaformis OT 569 = DSM 20559 RepID=M2Q522_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMD17341.1}; TaxID=999415 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Eggerthia.;" source="Eggerthia catenaformis OT 569 = DSM 20559.;"
L3_132_000M1_scaffold_186_7
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6220..7032)
DNA (813bp) protein (271aa)
LICD family protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QR58_9FIRM
LICD family protein {ECO:0000313|EMBL:CDC38340.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hypothetical protein
L3_132_000M1_scaffold_186_8
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7056..7955)
DNA (900bp) protein (300aa)
LPS biosynthesis protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E21
Putative LicD-family phosphotransferase {ECO:0000313|EMBL:CAI33106.1}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
LPS biosynthesis protein
L3_132_000M1_scaffold_186_9
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7997..9088)
DNA (1092bp) protein (364aa)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CBK83759.1}; EC=4.2.1.46 {ECO:0000313|EMBL:CBK83759.1};; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HFS6_9FIRM
L3_132_000M1_scaffold_186_10
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9116..9943)
DNA (828bp) protein (276aa)
Capsular biosynthesis protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P436_9FIRM
Capsular biosynthesis protein {ECO:0000313|EMBL:CCZ03862.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
glycosyltransferase
L3_132_000M1_scaffold_186_11
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9979..11388)
DNA (1410bp) protein (470aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIH0_9FIRM
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EDM62511.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
L3_132_000M1_scaffold_186_12
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11401..12843)
DNA (1443bp) protein (481aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIG9_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EDM62510.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
cell envelope-related function transcriptional attenuator common domain
L3_132_000M1_scaffold_186_13
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12863..13660)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74294.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_132_000M1_scaffold_186_14
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13672..14367)
DNA (696bp) protein (232aa)
Capsular exopolysaccharide family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F8_9CLOT
Capsular exopolysaccharide family {ECO:0000313|EMBL:EEG74295.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
polysaccharide biosynthesis protein
L3_132_000M1_scaffold_186_15
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14377..15159)
DNA (783bp) protein (261aa)
Chain length determinant protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0F9_9CLOT
Chain length determinant protein {ECO:0000313|EMBL:EEG74296.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Capsular polysaccharide biosynthesis protein
L3_132_000M1_scaffold_186_16
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15161..15886)
DNA (726bp) protein (242aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0G0_9CLOT
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:EEG74298.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
protein-tyrosine phosphatase
L3_132_000M1_scaffold_186_17
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16271..17146)
DNA (876bp) protein (292aa)
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases (EC:1.1.1.60 1.1.1.31)
Phosphogluconate dehydrogenase (Decarboxylating) NAD binding domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTW7_9FIRM
Phosphogluconate dehydrogenase (Decarboxylating) NAD binding domain protein {ECO:0000313|EMBL:CDE18250.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_186_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17169..17846)
DNA (678bp) protein (226aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FSJ5_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:CDE18249.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_186_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17862..19919)
DNA (2058bp) protein (686aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIF2_9FIRM
L3_132_000M1_scaffold_186_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19991..22129)
DNA (2139bp) protein (713aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Dorea RepID=A6BIF1_9FIRM
L3_132_000M1_scaffold_186_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22562..23647)
DNA (1086bp) protein (362aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EDM62491.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EDM62491.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Dorea RepID=A6BIF0_9FIRM
L3_132_000M1_scaffold_186_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23676..25052)
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIE9_9FIRM
L3_132_000M1_scaffold_186_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25209..25856)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62489.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_186_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26000..26794
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=2 Tax=Dorea RepID=A6BIE7_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDE17052.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_132_000M1_scaffold_186_25
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26772..27653
DNA (882bp) protein (294aa)
ABC transporter, permease protein n=2 Tax=Clostridiales RepID=B0ND07_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS07525.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_132_000M1_scaffold_186_26
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27940..28611)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72020.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Conserved hypothetical membrane spanning protein
L3_132_000M1_scaffold_186_27
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28608..29375)
DNA (768bp) protein (256aa)
VTC domain protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2F1_9FIRM
VTC domain protein {ECO:0000313|EMBL:EDR48233.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L3_132_000M1_scaffold_186_28
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29347..31125)
DNA (1779bp) protein (593aa)
CotH protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6RZ49_9FIRM
CotH protein {ECO:0000313|EMBL:CDC54218.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
membrane lipoprotein lipid attachment site
L3_132_000M1_scaffold_186_29
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31112..32581)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2E9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR48231.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
putative membrane spanning protein
L3_132_000M1_scaffold_186_30
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32562..33986)
DNA (1425bp) protein (475aa)
Glycosyltransferase group 1 family protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D6D8_9FIRM
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDD85348.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Glycosyltransferase
Displaying items 1-30 of 57 in total

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