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L3_132_000M1_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_252_1
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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29..499
DNA (471bp) protein (157aa)
5-nitroimidazole antibiotic resistance protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K7T9_9FIRM
5-nitroimidazole antibiotic resistance protein {ECO:0000313|EMBL:CDE72355.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
5-nitroimidazole antibiotic resistance protein
L3_132_000M1_scaffold_252_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

743..1633
DNA (891bp) protein (297aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Clostridium sp. CAG:81 RepID=R5FW26_9CLOT
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CCY09270.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
diguanylate cyclase (GGDEF) domain
L3_132_000M1_scaffold_252_3
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1812..3830
DNA (2019bp) protein (673aa)
Signal transduction histidine kinase n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LVZ6_9FIRM
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL21799.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Signal transduction histidine kinase
L3_132_000M1_scaffold_252_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3848..4720
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17788.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_252_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4734..5309
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BH12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17796.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_252_6
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5434..5790
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6K0L7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66980.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_132_000M1_scaffold_252_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5795..6850)
DNA (1056bp) protein (352aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30891.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
pilus retraction protein PilT
L3_132_000M1_scaffold_252_8
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6883..7386)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DCG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74517.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L3_132_000M1_scaffold_252_9
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7379..7807)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MUJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71462.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_132_000M1_scaffold_252_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7804..8289)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGQ3_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06263.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_132_000M1_scaffold_252_11
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8286..8624)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D2S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74520.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L3_132_000M1_scaffold_252_12
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8640..9689)
DNA (1050bp) protein (350aa)
Bacterial type II secretion system domain protein F n=1 Tax=Dorea sp. CAG:105 RepID=R5DF81_9FIRM
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:CCX74521.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
Type II secretory pathway, component PulF
L3_132_000M1_scaffold_252_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9754..10680)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30885.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_132_000M1_scaffold_252_14
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10716..11465)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D301_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74523.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L3_132_000M1_scaffold_252_15
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11458..12057)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2S2_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
RNA polymerase sigma factor, sigma-70 family
L3_132_000M1_scaffold_252_16
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12076..12771)
DNA (696bp) protein (232aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D2T3_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CCX74525.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
GGDEF domain-containing protein
L3_132_000M1_scaffold_252_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12931..14082)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77602.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diguanylate cyclase (GGDEF) domain
L3_132_000M1_scaffold_252_18
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14345..14902
DNA (558bp) protein (186aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPQ8_9FIRM
L3_132_000M1_scaffold_252_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14929..16497
DNA (1569bp) protein (523aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2H6_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDE20192.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_252_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16849..20004
DNA (3156bp) protein (1052aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BH69_9FIRM
L3_132_000M1_scaffold_252_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20038..22515
DNA (2478bp) protein (826aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=2 Tax=Dorea RepID=A6BH70_9FIRM
L3_132_000M1_scaffold_252_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22642..23592
DNA (951bp) protein (317aa)
SpoIID/LytB domain protein n=2 Tax=Dorea RepID=A6BH71_9FIRM
SpoIID/LytB domain protein {ECO:0000313|EMBL:EDM63059.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
SpoIID/LytB domain
L3_132_000M1_scaffold_252_23
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23637..24443
DNA (807bp) protein (269aa)
Peptidase, M23 family n=2 Tax=Dorea RepID=A6BH72_9FIRM
Peptidase M23 family {ECO:0000313|EMBL:CDE19554.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Membrane-bound metallopeptidase
L3_132_000M1_scaffold_252_24
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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24603..24872
DNA (270bp) protein (90aa)
GIY-YIG catalytic domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0Q9_9FIRM
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EDM63061.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
putative O-methyltransferase
L3_132_000M1_scaffold_252_25
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24988..25650)
DNA (663bp) protein (221aa)
Channel protein, hemolysin III family n=2 Tax=Dorea RepID=A6BH74_9FIRM
Channel protein, hemolysin III family {ECO:0000313|EMBL:EDM63062.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
channel protein, hemolysin III family
L3_132_000M1_scaffold_252_26
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25800..26666)
DNA (867bp) protein (289aa)
Transcriptional regulator AraC family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZJ2_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE20649.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, AraC family
L3_132_000M1_scaffold_252_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26902..28185
DNA (1284bp) protein (428aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0G9_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDE20650.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_132_000M1_scaffold_252_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28231..29109
DNA (879bp) protein (293aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Dorea longicatena CAG:42 RepID=R7G144_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDE20651.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_132_000M1_scaffold_252_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29109..29951
DNA (843bp) protein (281aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Dorea longicatena CAG:42 RepID=R7G3R6_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDE20652.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_132_000M1_scaffold_252_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29995..32181
DNA (2187bp) protein (729aa)
Alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G1K2_9FIRM
Alpha-galactosidase {ECO:0000313|EMBL:CDE20653.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Displaying items 1-30 of 47 in total

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