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L3_132_000M1_scaffold_300

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_300_1
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1019)
DNA (1017bp) protein (339aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FY20_9FIRM
L3_132_000M1_scaffold_300_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1048..1737)
DNA (690bp) protein (230aa)
RDD family protein n=2 Tax=Dorea RepID=A6BFJ9_9FIRM
RDD family protein {ECO:0000313|EMBL:EDM63405.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
RDD domain-containing protein
L3_132_000M1_scaffold_300_3
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1823..2806)
DNA (984bp) protein (328aa)
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:EDM63406.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDM63406.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
sppA; putative signal peptide peptidase SppA (EC:3.4.21.-)
Signal peptide peptidase SppA, 36K type n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFK0_9FIRM
L3_132_000M1_scaffold_300_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2863..5283)
DNA (2421bp) protein (807aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Dorea RepID=A6BFK1_9FIRM
L3_132_000M1_scaffold_300_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5320..6342)
DNA (1023bp) protein (341aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Dorea RepID=A6BFK2_9FIRM
L3_132_000M1_scaffold_300_6
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6691..7515)
DNA (825bp) protein (275aa)
YihY family protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVM9_9FIRM
YihY family protein {ECO:0000313|EMBL:CDE18603.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Predicted membrane protein
L3_132_000M1_scaffold_300_7
unknown

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comp(7518..7637)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_132_000M1_scaffold_300_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7634..9010)
DNA (1377bp) protein (459aa)
SpoIID/LytB domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FY03_9FIRM
SpoIID/LytB domain protein {ECO:0000313|EMBL:CDE18602.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
SpoIID/LytB domain-containing protein
L3_132_000M1_scaffold_300_9
unknown

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comp(9039..9284)
DNA (246bp) protein (82aa)

This feature has no annotations

L3_132_000M1_scaffold_300_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9377..10981)
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=2 Tax=Dorea RepID=A6BFK5_9FIRM
L3_132_000M1_scaffold_300_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11263..12750)
DNA (1488bp) protein (496aa)
L-threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FUS4_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDE18600.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_300_12
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12773..13264)
DNA (492bp) protein (164aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTG9_9FIRM
L3_132_000M1_scaffold_300_13
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13264..14538)
DNA (1275bp) protein (425aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVM3_9FIRM
L3_132_000M1_scaffold_300_14
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14656..15489)
DNA (834bp) protein (278aa)
PHP domain protein {ECO:0000313|EMBL:EDM63415.1}; EC=3.1.3.- {ECO:0000313|EMBL:EDM63415.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
PHP domain protein n=2 Tax=Dorea RepID=A6BFK9_9FIRM
Predicted metal-dependent phosphoesterases (PHP family)
L3_132_000M1_scaffold_300_15
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15597..16556)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63416.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_300_16
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16648..17229)
DNA (582bp) protein (194aa)
Putative RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL1_9FIRM
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:EDM63417.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_300_17
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17326..18177)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63418.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_300_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18359..18550
DNA (192bp) protein (64aa)
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein n=2 Tax=Dorea RepID=A6BFL3_9FIRM
Pyruvate phosphate dikinase PEP/pyruvate binding domain protein {ECO:0000313|EMBL:CDE18539.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_300_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18622..19239)
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BFL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18537.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_300_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19342..19866)
DNA (525bp) protein (175aa)
HTH domain protein n=2 Tax=Dorea RepID=A6BFL5_9FIRM
HTH domain protein {ECO:0000313|EMBL:EDM63421.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Predicted small molecule binding protein (contains 3H domain)
L3_132_000M1_scaffold_300_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19944..20798)
DNA (855bp) protein (285aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EDM63422.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EDM63422.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL6_9FIRM
L3_132_000M1_scaffold_300_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20875..22068)
DNA (1194bp) protein (398aa)
Aspartate oxidase (EC:1.4.3.16)
FAD binding domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFL7_9FIRM
FAD binding domain protein {ECO:0000313|EMBL:EDM63423.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_132_000M1_scaffold_300_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22247..24559)
DNA (2313bp) protein (771aa)
Efflux ABC transporter, permease protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFM3_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDM63429.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_132_000M1_scaffold_300_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24574..25272)
DNA (699bp) protein (233aa)
ABC transporter, ATP-binding protein n=2 Tax=Dorea RepID=A6BFM4_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDE18511.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_132_000M1_scaffold_300_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25472..26752)
DNA (1281bp) protein (427aa)
Histidine kinase A domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVD8_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:CDE18508.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
integral membrane sensor signal transduction histidine kinase
L3_132_000M1_scaffold_300_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26715..27473)
DNA (759bp) protein (253aa)
Response regulator receiver domain protein n=2 Tax=Dorea RepID=A6BFM6_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDM63432.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_132_000M1_scaffold_300_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27525..28403)
DNA (879bp) protein (293aa)
Putative membrane protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FUH8_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDE18505.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
protein of unknown function DUF6 transmembrane
L3_132_000M1_scaffold_300_28
unknown

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comp(28580..28774)
DNA (195bp) protein (65aa)

This feature has no annotations

L3_132_000M1_scaffold_300_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29226..30980)
DNA (1755bp) protein (585aa)
Nitrogen regulatory protein P-II n=1 Tax=Dorea longicatena CAG:42 RepID=R7FR03_9FIRM
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CDE16963.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ammonium transporter
L3_132_000M1_scaffold_300_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31179..31409)
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BJ78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE16961.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Displaying items 1-30 of 41 in total

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