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L3_132_000M1_scaffold_375

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_375_1
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..101
DNA (99bp) protein (33aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PAF7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL21412.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_132_000M1_scaffold_375_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

471..923
DNA (453bp) protein (151aa)
Hsp20/alpha crystallin family protein n=2 Tax=Dorea RepID=A6BKD2_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EDM61820.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
heat shock protein Hsp20
L3_132_000M1_scaffold_375_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1034..2047
DNA (1014bp) protein (338aa)
Putative chaperone protein DnaJ n=2 Tax=Dorea RepID=A6BKD1_9FIRM
Putative chaperone protein DnaJ {ECO:0000313|EMBL:CDE17169.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_132_000M1_scaffold_375_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2237..3298
DNA (1062bp) protein (354aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=2 Tax=Dorea RepID=R7FQP5_9FIRM
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:CDE17170.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_375_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3448..4149
DNA (702bp) protein (234aa)
Pentapeptide repeat protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJI7_9FIRM
Pentapeptide repeat protein {ECO:0000313|EMBL:EDM62070.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
pentapeptide repeat-containing protein
L3_132_000M1_scaffold_375_6
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4250..5002
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17182.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Predicted permeases
L3_132_000M1_scaffold_375_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5081..5725
DNA (645bp) protein (215aa)
Formimidoyltetrahydrofolate cyclodeaminase (EC:3.5.4.9 4.3.1.4)
Formiminotransferase-cyclodeaminase n=2 Tax=Dorea RepID=A6BJJ2_9FIRM
Formiminotransferase-cyclodeaminase {ECO:0000313|EMBL:CDE17183.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_375_8
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5777..6628
DNA (852bp) protein (284aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJJ3_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_132_000M1_scaffold_375_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6656..8023
DNA (1368bp) protein (456aa)
MATE efflux family protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVW9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDE18678.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative efflux protein, MATE family
L3_132_000M1_scaffold_375_10
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8049..11204
DNA (3156bp) protein (1052aa)
Diguanylate cyclase (GGDEF) domain protein n=2 Tax=Eubacterium RepID=R6FX52_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDB17803.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
diguanylate cyclase (GGDEF) domain
L3_132_000M1_scaffold_375_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11236..12225
DNA (990bp) protein (330aa)
RelA/SpoT domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFW6_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:CDE18679.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Guanosine polyphosphate pyrophosphohydrolases/synthetases
L3_132_000M1_scaffold_375_12
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12358..13755
DNA (1398bp) protein (466aa)
Amino acid carrier protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FV26_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CDE18680.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
sodium:alanine symporter family protein
L3_132_000M1_scaffold_375_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13829..14722)
DNA (894bp) protein (298aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFW4_9FIRM
L3_132_000M1_scaffold_375_14
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14864..15397
DNA (534bp) protein (178aa)
Hydrolase NUDIX family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FVX5_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDE18683.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
NUDIX hydrolase
L3_132_000M1_scaffold_375_15
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15360..15614
DNA (255bp) protein (85aa)
Aldose 1-epimerase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFW2_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:EDM63518.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Galactose mutarotase and related enzymes
L3_132_000M1_scaffold_375_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15654..15962
DNA (309bp) protein (103aa)
Thioredoxin n=2 Tax=Dorea RepID=A6BFW1_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
thioredoxin
L3_132_000M1_scaffold_375_17
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16015..16812)
DNA (798bp) protein (266aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFW0_9FIRM
Dihydrodipicolinate reductase
L3_132_000M1_scaffold_375_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17057..17686
DNA (630bp) protein (210aa)
HAD hydrolase family IA variant 1 n=1 Tax=Dorea longicatena CAG:42 RepID=R7FV45_9FIRM
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CDE18695.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
HAD-superfamily hydrolase
L3_132_000M1_scaffold_375_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17778..18707
DNA (930bp) protein (310aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=2 Tax=Dorea RepID=A6BFV7_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_375_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18908..19156
DNA (249bp) protein (83aa)
Sporulation protein, YlmC/YmxH family n=2 Tax=Dorea RepID=A6BFV4_9FIRM
Sporulation protein YlmC/YmxH family {ECO:0000313|EMBL:CDE18706.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
sporulation protein, YlmC/YmxH family
L3_132_000M1_scaffold_375_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19180..19698
DNA (519bp) protein (173aa)
Transcriptional repressor NrdR n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFV3_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
transcriptional regulator NrdR
L3_132_000M1_scaffold_375_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19904..20638
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=2 Tax=Dorea RepID=A6BFV2_9FIRM
L3_132_000M1_scaffold_375_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20725..21477
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EDM63507.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EDM63507.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=2 Tax=Dorea RepID=A6BFV1_9FIRM
L3_132_000M1_scaffold_375_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21582..22316)
DNA (735bp) protein (245aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=2 Tax=Dorea RepID=A6BFV0_9FIRM
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDE18711.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_375_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22471..23013
DNA (543bp) protein (181aa)
Guanosine polyphosphate pyrophosphohydrolases/synthetases (EC:3.1.7.2)
HD domain protein n=2 Tax=Dorea RepID=A6BFU9_9FIRM
HD domain protein {ECO:0000313|EMBL:CDE18712.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_375_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23056..23406
DNA (351bp) protein (117aa)
Acylphosphatase {ECO:0000313|EMBL:EDM63504.1}; EC=3.6.1.7 {ECO:0000313|EMBL:EDM63504.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Acylphosphatases (EC:3.6.1.7)
Acylphosphatase n=2 Tax=Dorea RepID=A6BFU8_9FIRM
L3_132_000M1_scaffold_375_27
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23504..24094
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family n=2 Tax=Dorea RepID=A6BFU7_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDM63503.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
TetR family transcriptional regulator
L3_132_000M1_scaffold_375_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24146..24787)
DNA (642bp) protein (214aa)
Transcriptional regulator, GntR family n=2 Tax=Dorea RepID=A6BFU6_9FIRM
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDE18716.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_375_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25080..25874
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FYE1_9FIRM
L3_132_000M1_scaffold_375_30
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26020..26655
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BFU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63500.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
Displaying items 1-30 of 39 in total

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