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L3_132_000M1_scaffold_430

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_430_1
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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191..949
DNA (759bp) protein (253aa)
Response regulator receiver domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FT12_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDE17985.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator
L3_132_000M1_scaffold_430_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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946..1962
DNA (1017bp) protein (339aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEN6_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_132_000M1_scaffold_430_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2108..2875
DNA (768bp) protein (256aa)
Putative bacteriocin export ABC transporter lactococcin 972 group n=2 Tax=Dorea RepID=R7FTY0_9FIRM
Putative bacteriocin export ABC transporter lactococcin 972 group {ECO:0000313|EMBL:CDE17988.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_132_000M1_scaffold_430_4
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2868..4796
DNA (1929bp) protein (643aa)
Efflux ABC transporter, permease protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEN4_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDM64073.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
lipoprotein release ABC transporter permease
L3_132_000M1_scaffold_430_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4881..5225
DNA (345bp) protein (115aa)
Cupin domain protein n=2 Tax=Dorea RepID=A6BEN3_9FIRM
Cupin domain protein {ECO:0000313|EMBL:CDE17992.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_6
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5353..6441)
DNA (1089bp) protein (363aa)
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase (EC:2.6.1.9)
Putative histidinol-phosphate transaminase n=2 Tax=Dorea RepID=A6BEN2_9FIRM
Putative histidinol-phosphate transaminase {ECO:0000313|EMBL:CDE17994.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_430_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6570..9866
DNA (3297bp) protein (1099aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17996.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_8
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9887..11170
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64069.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_430_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11145..11924
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FRP4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17999.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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12032..12889
DNA (858bp) protein (286aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEM8_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EDM64067.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
amino acid ABC transporter substrate-binding protein
L3_132_000M1_scaffold_430_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12978..13628
DNA (651bp) protein (217aa)
ABC transporter, permease protein n=2 Tax=Dorea RepID=A6BEM7_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDE18002.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_132_000M1_scaffold_430_12
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13641..14324
DNA (684bp) protein (228aa)
ABC transporter, ATP-binding protein n=2 Tax=Dorea RepID=A6BEM6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM64065.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
amino acid ABC transporter ATP-binding protein
L3_132_000M1_scaffold_430_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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14524..15951
DNA (1428bp) protein (476aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEM4_9FIRM
L3_132_000M1_scaffold_430_14
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16003..17436
DNA (1434bp) protein (478aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=2 Tax=Dorea RepID=A6BEM3_9FIRM
L3_132_000M1_scaffold_430_15
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17481..18434
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64061.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_430_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18431..19591
DNA (1161bp) protein (387aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18008.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_17
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19591..20103
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18010.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20240..21703
DNA (1464bp) protein (488aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=2 Tax=Dorea RepID=A6BEL9_9FIRM
L3_132_000M1_scaffold_430_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21713..23554
DNA (1842bp) protein (614aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FWB4_9FIRM
L3_132_000M1_scaffold_430_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23537..23848)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BEL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64055.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Protein of unknown function (DUF1292).
L3_132_000M1_scaffold_430_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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23991..25010
DNA (1020bp) protein (340aa)
Sugar-binding domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL6_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDM64056.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_132_000M1_scaffold_430_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25044..26801
DNA (1758bp) protein (586aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Putative glycogen debranching enzyme GlgX n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL5_9FIRM
Putative glycogen debranching enzyme GlgX {ECO:0000313|EMBL:EDM64054.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_132_000M1_scaffold_430_23
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26746..27306
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FTN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18016.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_430_24
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27790..29568
DNA (1779bp) protein (593aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL3_9FIRM
L3_132_000M1_scaffold_430_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29608..30717
DNA (1110bp) protein (370aa)
RNA polymerase sigma factor SigA n=2 Tax=Dorea RepID=A6BEL2_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_132_000M1_scaffold_430_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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30732..31427
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM64050.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Predicted SAM-dependent methyltransferase
L3_132_000M1_scaffold_430_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31447..32241
DNA (795bp) protein (265aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Dorea RepID=A6BEL0_9FIRM
conserved hypothetical protein TIGR00486
L3_132_000M1_scaffold_430_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32329..33996
DNA (1668bp) protein (556aa)
Uridine kinase (EC:2.7.1.48)
Uncharacterized protein n=2 Tax=Dorea RepID=R7FU17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE18023.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_132_000M1_scaffold_430_29
unknown

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comp(34035..34112)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 29 items

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