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L3_132_000M1_scaffold_475

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_475_1
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..601
DNA (600bp) protein (200aa)
Toxin-antitoxin system antitoxin component Xre family n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F644_9CLOT
Toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CCX99019.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
transcriptional regulator
L3_132_000M1_scaffold_475_2
unknown

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639..1229
DNA (591bp) protein (197aa)

This feature has no annotations

L3_132_000M1_scaffold_475_3
unknown

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1246..1428
DNA (183bp) protein (61aa)

This feature has no annotations

L3_132_000M1_scaffold_475_4
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1510..3057)
DNA (1548bp) protein (516aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESN1_9FIRM
L3_132_000M1_scaffold_475_5
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3139..4500)
DNA (1362bp) protein (454aa)
MATE efflux family protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG35_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDM63246.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
putative efflux protein, MATE family
L3_132_000M1_scaffold_475_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4607..4837)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63248.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
PTS HPr component phosphorylation site.
L3_132_000M1_scaffold_475_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4963..6507)
DNA (1545bp) protein (515aa)
Transcriptional regulator AraC family n=1 Tax=Dorea longicatena CAG:42 RepID=R7G1D9_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE20985.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
AraC family transcriptional regulator
L3_132_000M1_scaffold_475_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6540..7217)
DNA (678bp) protein (226aa)
Transcriptional regulator TetR family n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0I3_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDE20984.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, TetR family
L3_132_000M1_scaffold_475_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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7529..8698
DNA (1170bp) protein (390aa)
Transporter gate domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2K0_9FIRM
Transporter gate domain protein {ECO:0000313|EMBL:CDE20983.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_475_10
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8914..9177)
DNA (264bp) protein (88aa)
Sporulation transcriptional regulator SpoIIID n=2 Tax=Dorea RepID=A6BG42_9FIRM
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:CDE20982.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
DeoR family transcriptional regulator
L3_132_000M1_scaffold_475_11
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9282..9617)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63254.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_475_12
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9631..10038)
DNA (408bp) protein (136aa)
DNA-binding helix-turn-helix protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG44_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM63255.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
transcriptional regulator
L3_132_000M1_scaffold_475_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10192..10773)
DNA (582bp) protein (194aa)
Putative manganese efflux pump MntP n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG45_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Predicted membrane protein
L3_132_000M1_scaffold_475_14
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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11127..11717
DNA (591bp) protein (197aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Pseudouridine synthase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG46_9FIRM
pseudouridine synthase family
L3_132_000M1_scaffold_475_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11827..12960)
DNA (1134bp) protein (378aa)
Trigger factor n=1 Tax=Dorea longicatena CAG:42 RepID=R7G4M0_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
trigger factor
L3_132_000M1_scaffold_475_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13210..13650
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G1Z6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20961.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_475_17
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13678..14133)
DNA (456bp) protein (152aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BG49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20960.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_475_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14142..14963)
DNA (822bp) protein (274aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0G1_9FIRM
L3_132_000M1_scaffold_475_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15130..16110)
DNA (981bp) protein (327aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2H7_9FIRM
L3_132_000M1_scaffold_475_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16191..19667)
DNA (3477bp) protein (1159aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG52_9FIRM
L3_132_000M1_scaffold_475_21
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19747..19995)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G1Z1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20956.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_475_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20054..20893)
DNA (840bp) protein (280aa)
S1 RNA binding domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG54_9FIRM
S1 RNA binding domain protein {ECO:0000313|EMBL:EDM63265.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_132_000M1_scaffold_475_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20941..21660)
DNA (720bp) protein (240aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG55_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:EDM63266.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_132_000M1_scaffold_475_24
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21663..22334)
DNA (672bp) protein (224aa)
Putative stage II sporulation protein R n=2 Tax=Dorea RepID=R7G2H3_9FIRM
Putative stage II sporulation protein R {ECO:0000313|EMBL:CDE20953.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
stage II sporulation protein R
L3_132_000M1_scaffold_475_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22466..23143)
DNA (678bp) protein (226aa)
FCD domain protein n=2 Tax=Dorea RepID=A6BG57_9FIRM
FCD domain protein {ECO:0000313|EMBL:CDE20952.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, GntR family
L3_132_000M1_scaffold_475_26
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23146..24021)
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Dorea RepID=A6BG58_9FIRM
L3_132_000M1_scaffold_475_27
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24057..25613)
DNA (1557bp) protein (519aa)
LysM domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG59_9FIRM
LysM domain protein {ECO:0000313|EMBL:EDM63270.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
LysM domain.
L3_132_000M1_scaffold_475_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25641..26060)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20949.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L3_132_000M1_scaffold_475_29
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26166..26897
DNA (732bp) protein (244aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Acyltransferase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2G9_9FIRM
L3_132_000M1_scaffold_475_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27001..28455
DNA (1455bp) protein (485aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G4K4_9FIRM
Displaying items 1-30 of 34 in total

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