ggKbase home page

L3_132_000M1_scaffold_153

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_153_1
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..130
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I040_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30111.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L3_132_000M1_scaffold_153_2
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

349..1194
DNA (846bp) protein (282aa)
Phage integrase, SAM-like domain protein n=2 Tax=Clostridium RepID=U2CY01_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ENZ45206.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Site-specific recombinase XerD
L3_132_000M1_scaffold_153_3
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1653..8003
DNA (6351bp) protein (2117aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GPD3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL42668.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_132_000M1_scaffold_153_4
unknown

Not on your lists

8236..8463
DNA (228bp) protein (76aa)

This feature has no annotations

L3_132_000M1_scaffold_153_5
Corynebacterium genitalium, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8531..9283
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Streptomyces sp. S4 RepID=UPI0002493F5C
cell division protein
DivIVA domain protein {ECO:0000313|EMBL:EFK53608.1}; TaxID=585529 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium genitalium ATCC 33030.;"
L3_132_000M1_scaffold_153_6
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9280..9846
DNA (567bp) protein (189aa)
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:CBL42671.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Signal peptidase I, bacterial type n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GPD6_9FIRM
L3_132_000M1_scaffold_153_7
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9853..10689
DNA (837bp) protein (279aa)
Cyclic diguanylate phosphodiesterase (EAL) domain protein n=4 Tax=Clostridium RepID=E9SQ72_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07585.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
FOG: EAL domain
L3_132_000M1_scaffold_153_8
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10924..12261
DNA (1338bp) protein (446aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QZ03_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDF42691.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L3_132_000M1_scaffold_153_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12339..13196
DNA (858bp) protein (286aa)
Peptidase propeptide and YPEB domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSV8_9CLOT
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:EDO61254.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_132_000M1_scaffold_153_10
unknown

Not on your lists

13135..13383
DNA (249bp) protein (83aa)

This feature has no annotations

L3_132_000M1_scaffold_153_11
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13610..14200
DNA (591bp) protein (197aa)
SEFIR domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BKR7_9FIRM
SEFIR domain protein {ECO:0000313|EMBL:EDM61726.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
protein-transmembrane prediction
L3_132_000M1_scaffold_153_12
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14193..14654
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Streptococcus intermedius SK54 RepID=U2XPH1_STRIT
Uncharacterized protein {ECO:0000313|EMBL:GAD37099.1}; TaxID=1000570 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus SK52 = DSM 20563.;"
hypothetical protein
L3_132_000M1_scaffold_153_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15094..16482)
DNA (1389bp) protein (463aa)
Amino acid carrier protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPG8_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFB75430.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amino acid carrier protein
L3_132_000M1_scaffold_153_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16654..17616)
DNA (963bp) protein (321aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L-lactate dehydrogenase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M0Q2_CLOB8
L-lactate dehydrogenase
L3_132_000M1_scaffold_153_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17742..18635
DNA (894bp) protein (298aa)
LysR substrate binding domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9J1_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEG52018.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
LysR family transcriptional regulator
L3_132_000M1_scaffold_153_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18875..19375
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FNQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG95777.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted metal-binding protein related to the C-terminal domain of SecA
L3_132_000M1_scaffold_153_17
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19811..21586
DNA (1776bp) protein (592aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FNQ3_9FIRM
L3_132_000M1_scaffold_153_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21732..22100
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FR99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30194.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_153_19
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22315..22905
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30193.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_153_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23237..23398
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FR95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30192.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_153_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23505..24041
DNA (537bp) protein (179aa)
Protein MraZ n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I0A0_9FIRM
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_153_22
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24097..25035
DNA (939bp) protein (313aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKA9_9FIRM
16S rRNA m(4)C1402 methyltransferase
L3_132_000M1_scaffold_153_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25039..25545
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94954.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Septum formation initiator.
L3_132_000M1_scaffold_153_24
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25583..27679
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30188.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
peptidoglycan glycosyltransferase
L3_132_000M1_scaffold_153_25
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27742..29457
DNA (1716bp) protein (572aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR90_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EEG94952.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_132_000M1_scaffold_153_26
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29522..30490
DNA (969bp) protein (323aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I097_9FIRM
L3_132_000M1_scaffold_153_27
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30512..31915
DNA (1404bp) protein (468aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR88_9FIRM
UDP-N-acetylmuramoylalanine--D-glutamate ligase
L3_132_000M1_scaffold_153_28
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31970..33088
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HPY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30184.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
cell division membrane protein
L3_132_000M1_scaffold_153_29
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33091..34065
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30183.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Cell division septal protein
L3_132_000M1_scaffold_153_30
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34261..35448
DNA (1188bp) protein (396aa)
Cell division protein FtsZ n=2 Tax=Roseburia RepID=C0FR85_9FIRM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
cell division protein FtsZ
Displaying items 1-30 of 55 in total

View Taxonomy