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L3_132_000M1_scaffold_167

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_132_000M1_scaffold_167_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(131..1207)
DNA (1077bp) protein (359aa)
Possible dehydrogenase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFX0_9FIRM
Possible dehydrogenase {ECO:0000313|EMBL:CCZ79627.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
dehydrogenase
L3_132_000M1_scaffold_167_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1239..2159)
DNA (921bp) protein (307aa)
AP-endonuclease/AP-lyase n=2 Tax=root RepID=R5UMV9_9FIRM
AP-endonuclease/AP-lyase {ECO:0000313|EMBL:CCZ79628.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
AP-endonuclease/AP-lyase
L3_132_000M1_scaffold_167_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2187..3065)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79629.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_132_000M1_scaffold_167_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3096..4163)
DNA (1068bp) protein (356aa)
Hypothetical oxidoreductase YdgJ n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZHX5_EUBR3
hypothetical oxidoreductase YdgJ
Hypothetical oxidoreductase YdgJ {ECO:0000313|EMBL:ACR76612.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_167_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4220..5929)
DNA (1710bp) protein (570aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZHX6_EUBR3
sugar ABC transporter substrate-binding protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ACR76613.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_167_6
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5945..6829)
DNA (885bp) protein (295aa)
Integral membrane protein n=1 Tax=Blautia sp. CAG:52 RepID=R6GB32_9FIRM
Integral membrane protein {ECO:0000313|EMBL:CDB21520.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
integral membrane protein
L3_132_000M1_scaffold_167_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6842..7732)
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZHX8_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76615.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_132_000M1_scaffold_167_8
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7844..8854)
DNA (1011bp) protein (337aa)
Two-component response regulator n=1 Tax=Roseburia sp. CAG:100 RepID=R7R5B4_9FIRM
Two-component response regulator {ECO:0000313|EMBL:CDF45071.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
two-component response regulator
L3_132_000M1_scaffold_167_9
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8869..10644)
DNA (1776bp) protein (592aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
Two-component sensor histidine kinase n=1 Tax=Roseburia sp. CAG:100 RepID=R7R285_9FIRM
two-component sensor histidine kinase
L3_132_000M1_scaffold_167_10
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11017..12444)
DNA (1428bp) protein (476aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEG94192.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEG94192.1};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTN3_9FIRM
L3_132_000M1_scaffold_167_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12454..13467)
DNA (1014bp) protein (338aa)
HDIG domain protein n=2 Tax=Roseburia RepID=C0FTN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31130.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
HD-superfamily hydrolase
L3_132_000M1_scaffold_167_12
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13437..14717)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HSM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31129.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
HtrA-like serine protease (with PDZ domain)
L3_132_000M1_scaffold_167_13
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14960..17344
DNA (2385bp) protein (795aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Endonuclease MutS2 n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HN86_9FIRM
MutS2 family protein
L3_132_000M1_scaffold_167_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17427..18128
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=2 Tax=Roseburia RepID=C0FTM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31127.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_167_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18129..19541
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTM7_9FIRM
sensory transduction histidine kinase
L3_132_000M1_scaffold_167_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19544..20053)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94185.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_132_000M1_scaffold_167_17
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20053..20571)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94184.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_132_000M1_scaffold_167_18
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20803..22506)
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LGG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60169.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_132_000M1_scaffold_167_19
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22684..22920)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94181.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Protein of unknown function (DUF3343).
L3_132_000M1_scaffold_167_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22937..23554)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HLW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29154.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L3_132_000M1_scaffold_167_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23569..24129)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HHC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29155.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Mug; G:T/U mismatch-specific DNA glycosylase
L3_132_000M1_scaffold_167_22
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24170..26758)
DNA (2589bp) protein (863aa)
Histidine kinase A domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTL9_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:EEG94178.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_132_000M1_scaffold_167_23
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26778..27464)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HWL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29157.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_132_000M1_scaffold_167_24
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28047..29111)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94176.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_132_000M1_scaffold_167_25
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29334..31976)
DNA (2643bp) protein (881aa)
Efflux ABC transporter, permease protein n=2 Tax=Roseburia RepID=C0FTL6_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEG94175.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_132_000M1_scaffold_167_26
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32016..32681)
DNA (666bp) protein (222aa)
ABC transporter, ATP-binding protein n=2 Tax=Roseburia RepID=C0FTL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29162.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_132_000M1_scaffold_167_27
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32873..33817)
DNA (945bp) protein (315aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HHX7_9FIRM
Signal transduction histidine kinase
L3_132_000M1_scaffold_167_28
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33774..34499)
DNA (726bp) protein (242aa)
Response regulator receiver domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTL1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG94170.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_132_000M1_scaffold_167_29
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34615..35151)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=2 Tax=Roseburia RepID=C0FTL0_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
rplQ; 50S ribosomal protein L17
L3_132_000M1_scaffold_167_30
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35391..36350)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA-directed RNA polymerase subunit alpha n=3 Tax=root RepID=C0FTK9_9FIRM
DNA-directed RNA polymerase subunit alpha
Displaying items 1-30 of 64 in total

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