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L3_133_000G1_scaffold_173

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000G1_scaffold_173_1
unknown

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3..107
DNA (105bp) protein (35aa)

This feature has no annotations

L3_133_000G1_scaffold_173_2
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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100..516
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EG79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA89007.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein predicted by Glimmer/Critica
L3_133_000G1_scaffold_173_3
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

552..1136
DNA (585bp) protein (195aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
DNA polymerase III subunit alpha n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R0G4_9CLOT
DNA polymerase III subunit alpha
L3_133_000G1_scaffold_173_4
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1453..1680
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IT76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22152.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
helix-turn-helix family protein
L3_133_000G1_scaffold_173_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1799..2050
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM52563.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_133_000G1_scaffold_173_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2063..3091
DNA (1029bp) protein (343aa)
Site-specific recombinase, phage integrase family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPL2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EHM52562.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative integrase
L3_133_000G1_scaffold_173_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3325..4065
DNA (741bp) protein (247aa)
Peptidase, M23 family n=2 Tax=Clostridiales RepID=U2A8Z4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO22661.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative metalloendopeptidase
L3_133_000G1_scaffold_173_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4137..5045)
DNA (909bp) protein (303aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C4G6_9CLOT
PAS/PAC sensor signal transduction histidine kinase
L3_133_000G1_scaffold_173_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5209..6222
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Clostridiales RepID=G9YPN4_9FIRM
glyceraldehyde-3-phosphate dehydrogenase
L3_133_000G1_scaffold_173_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6494..7564)
DNA (1071bp) protein (357aa)
Alanine racemase domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AS92_9CLOT
Alanine racemase domain protein {ECO:0000313|EMBL:ERI62248.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
alanine racemase
L3_133_000G1_scaffold_173_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7688..8068
DNA (381bp) protein (127aa)
Transcriptional regulator, GntR family n=3 Tax=Clostridiales RepID=G9YPN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54984.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8065..8925
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22656.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC transporter
L3_133_000G1_scaffold_173_13
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8922..9566
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C4H0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI62251.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_133_000G1_scaffold_173_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9569..10192
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BZ44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54981.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_133_000G1_scaffold_173_15
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10348..11328)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AS97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI62253.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_133_000G1_scaffold_173_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11325..11861)
DNA (537bp) protein (179aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2A903_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:ERI62254.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Fis family transcriptional regulator
L3_133_000G1_scaffold_173_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12016..14706)
DNA (2691bp) protein (897aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AQ85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI62255.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
peptidase M14 carboxypeptidase A
L3_133_000G1_scaffold_173_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14751..15677)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C4H5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54978.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_133_000G1_scaffold_173_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16245..17414)
DNA (1170bp) protein (390aa)
4-phosphoerythronate dehydrogenase n=3 Tax=Clostridiales RepID=G9YPP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22651.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative oxidoreductase
L3_133_000G1_scaffold_173_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17606..18691)
DNA (1086bp) protein (362aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
serC; Phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLW1_9FIRM
L3_133_000G1_scaffold_173_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18945..19301
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=U2A910_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55044.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19288..19710
DNA (423bp) protein (141aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Clostridiales RepID=G9YPP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22647.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19748..21070
DNA (1323bp) protein (441aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22646.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21140..21475
DNA (336bp) protein (112aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YPP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO22645.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21937..22647
DNA (711bp) protein (237aa)
PHP domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPP8_9FIRM
PHP domain protein {ECO:0000313|EMBL:EHM52492.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_133_000G1_scaffold_173_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22933..23427
DNA (495bp) protein (165aa)
NADH-quinone oxidoreductase, E subunit n=2 Tax=Clostridiales RepID=G9YPQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55039.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_133_000G1_scaffold_173_27
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24134..24685
DNA (552bp) protein (184aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLV4_9FIRM
hypothetical protein
L3_133_000G1_scaffold_173_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24690..25058
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YUN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM42024.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_133_000G1_scaffold_173_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25072..26874
DNA (1803bp) protein (601aa)
hndC; NADP-reducing hydrogenase subunit HndC (EC:1.12.1.3)
Protein HymB n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUM9_9FIRM
Protein HymB {ECO:0000313|EMBL:EHM42023.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_133_000G1_scaffold_173_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26889..28643
DNA (1755bp) protein (585aa)
hndD; NADP-reducing hydrogenase subunit HndC (EC:1.12.1.3)
Putative ferredoxin hydrogenase HydA1 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUM8_9FIRM
Putative ferredoxin hydrogenase HydA1 {ECO:0000313|EMBL:EHM42022.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Displaying items 1-30 of 105 in total

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