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L3_133_000G1_scaffold_309

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000G1_scaffold_309_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..289)
DNA (288bp) protein (96aa)
Uncharacterized protein n=12 Tax=Clostridium difficile RepID=T4KA99_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ25276.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_133_000G1_scaffold_309_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(294..1031)
DNA (738bp) protein (246aa)
CRISPR-associated endoribonuclease Cas6 {ECO:0000313|EMBL:EQE60987.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQE60987.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
CRISPR-associated endoribonuclease Cas6 n=25 Tax=Clostridium difficile RepID=T2TKE0_CLODI
hypothetical protein
L3_133_000G1_scaffold_309_3
unknown

Not on your lists

comp(1132..1308)
DNA (177bp) protein (59aa)
Uncharacterized protein n=60 Tax=Clostridium difficile RepID=T2TRX5_CLODI
L3_133_000G1_scaffold_309_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1742..2851
DNA (1110bp) protein (370aa)
ABC-type transport system, sugar-family ATP-binding protein {ECO:0000313|EMBL:CDT34187.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT34187.1};; Multiple sugar-binding transporter ATP-binding protein {ECO:0000313|EMBL:CDS88053.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=12 Tax=Clostridium difficile RepID=T2TJQ2_CLODI
ABC transporter ATP-binding protein
L3_133_000G1_scaffold_309_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2881..3648
DNA (768bp) protein (256aa)
PucR C-terminal helix-turn-helix domain protein n=12 Tax=Clostridium difficile RepID=T2THH8_CLODI
PucR C-terminal helix-turn-helix domain protein {ECO:0000313|EMBL:EQH98662.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
conserved hypothetical protein
L3_133_000G1_scaffold_309_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3836..5209)
DNA (1374bp) protein (458aa)
Sugar (And other) transporter family protein n=15 Tax=Clostridium difficile RepID=T2TGS2_CLODI
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL22794.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
transporter
L3_133_000G1_scaffold_309_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5245..6180)
DNA (936bp) protein (312aa)
putative glucokinase, ROK family (EC:2.7.1.-)
ROK family protein n=38 Tax=Clostridium difficile RepID=T2TGB6_CLODI
ROK family protein {ECO:0000313|EMBL:EFH07953.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L3_133_000G1_scaffold_309_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7146..8300)
DNA (1155bp) protein (385aa)
Chaperone protein DnaJ n=176 Tax=Clostridium difficile RepID=DNAJ_CLOD6
dnaJ; Chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_309_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8511..10358)
DNA (1848bp) protein (616aa)
Chaperone protein DnaK n=157 Tax=Clostridium difficile RepID=DNAK_CLOD6
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
dnaK; molecular chaperone DnaK
L3_133_000G1_scaffold_309_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10450..11070)
DNA (621bp) protein (207aa)
Protein GrpE n=189 Tax=Clostridium difficile RepID=GRPE_CLOD6
heat shock protein
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_309_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11100..12119)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor hrcA n=2 Tax=Clostridium difficile RepID=C9XLP7_CLODC
heat-inducible transcription repressor
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_309_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12222..13397)
DNA (1176bp) protein (392aa)
hemN; Oxygen-independent coproporphyrinogen-IIIoxidase (Coproporphyrinogenase) (Coprogen oxidase) (EC:1.3.99.22)
Radical SAM superfamily protein n=12 Tax=Clostridium difficile RepID=T2THL6_CLODI
Radical SAM superfamily protein {ECO:0000313|EMBL:EQE60931.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_309_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13569..14882)
DNA (1314bp) protein (438aa)
Amino acid permease family protein n=26 Tax=Clostridium difficile RepID=T2TJR4_CLODI
putative amino acid/polyamine transporter
Amino acid permease family protein {ECO:0000313|EMBL:EQH98671.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_133_000G1_scaffold_309_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15115..16452)
DNA (1338bp) protein (446aa)
tRNA nucleotidyltransferase/poly(A) polymerase family protein n=21 Tax=Clostridium difficile RepID=G6BZL3_CLODI
Poly A polymerase head domain protein {ECO:0000313|EMBL:EQE60941.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
poly(A) polymerase
L3_133_000G1_scaffold_309_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16601..18406)
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Elongation factor 4 n=120 Tax=Clostridium difficile RepID=LEPA_CLOD6
GTP-binding protein LepA
L3_133_000G1_scaffold_309_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18688..18939)
DNA (252bp) protein (84aa)
Uncharacterized protein n=66 Tax=Clostridium difficile RepID=U3XNV9_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30706.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_133_000G1_scaffold_309_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18970..19989)
DNA (1020bp) protein (340aa)
Stage II sporulation P family protein n=75 Tax=Clostridium difficile RepID=T3GIZ4_CLODC
spoIIP; Stage II sporulation protein P
Stage II sporulation protein P {ECO:0000313|EMBL:CEJ99091.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_133_000G1_scaffold_309_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20007..20960)
DNA (954bp) protein (318aa)
gpr; Spore endopeptidase (EC:3.4.24.78)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Germination protease n=178 Tax=Clostridium difficile RepID=T3GGP4_CLODC
L3_133_000G1_scaffold_309_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21302..22078)
DNA (777bp) protein (259aa)
Alpha/beta hydrolase family protein n=31 Tax=Clostridium difficile RepID=T2THJ4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22810.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
conserved hypothetical protein
L3_133_000G1_scaffold_309_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22112..22633)
DNA (522bp) protein (174aa)
Bacterial regulatory , arsR family protein n=19 Tax=Clostridium difficile RepID=T2TRA1_CLODI
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CCL22811.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Transcriptional regulator, ArsR family
L3_133_000G1_scaffold_309_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23202..23498
DNA (297bp) protein (99aa)
30S ribosomal protein S20 n=5 Tax=Clostridium difficile RepID=D5Q2H3_CLODI
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
rpsT; 30S ribosomal protein S20
L3_133_000G1_scaffold_309_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23685..24728)
DNA (1044bp) protein (348aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EQH98681.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EQH98681.1};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
DNA polymerase III, delta subunit n=5 Tax=Clostridium difficile RepID=T3GEY5_CLODC
DNA polymerase III, delta subunit
L3_133_000G1_scaffold_309_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24682..25983)
DNA (1302bp) protein (434aa)
ComEC/Rec2-related domain protein n=22 Tax=Clostridium difficile RepID=T2TJS5_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL22814.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
competence membrane protein
L3_133_000G1_scaffold_309_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26098..27282)
DNA (1185bp) protein (395aa)
Acetyltransferase domain protein n=22 Tax=Clostridium difficile RepID=T2THJ9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22815.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
gnat family acetyltransferase
L3_133_000G1_scaffold_309_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27291..28196)
DNA (906bp) protein (302aa)
Uncharacterized protein n=185 Tax=Clostridium difficile RepID=C9XMK3_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CEJ99099.1}; Uncharacterized conserved protein {ECO:0000313|EMBL:CKH33755.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88102.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_133_000G1_scaffold_309_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28384..29220
DNA (837bp) protein (279aa)
Metallo-beta-lactamase superfamily protein n=119 Tax=Clostridium difficile RepID=T2TBL5_CLODI
DNA uptake transporter
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQH98685.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_133_000G1_scaffold_309_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29362..30069)
DNA (708bp) protein (236aa)
ThiF family protein n=158 Tax=Clostridium difficile RepID=T3GGH4_CLODC
intron RNA domain IV
Putative molybdenum cofactor biosynthesis {ECO:0000313|EMBL:CAJ69366.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_133_000G1_scaffold_309_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30560..31399)
DNA (840bp) protein (280aa)
3D domain protein n=123 Tax=Clostridium difficile RepID=C9XMK6_CLODC
hypothetical protein
3D domain protein {ECO:0000313|EMBL:EQE60959.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_309_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31648..32322)
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Uracil-DNA glycosylase n=205 Tax=Clostridium difficile RepID=UNG_CLOD6
ung; uracil-DNA glycosylase
L3_133_000G1_scaffold_309_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32359..32730)
DNA (372bp) protein (124aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=T3IPI1_CLODC
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CCK91288.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
Displaying items 1-30 of 63 in total

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