ggKbase home page

L3_133_000G1_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000G1_scaffold_339_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..155
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y723_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08992.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
O-antigen polymerase
L3_133_000G1_scaffold_339_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

224..1288
DNA (1065bp) protein (355aa)
Efflux transporter RND family MFP subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW54_9PORP
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD13525.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cation efflux system protein
L3_133_000G1_scaffold_339_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1350..4433
DNA (3084bp) protein (1028aa)
RND transporter HAE1/HME family permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XB29_9PORP
RND transporter HAE1/HME family permease protein {ECO:0000313|EMBL:CDD13526.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cation efflux system protein
L3_133_000G1_scaffold_339_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4446..5933
DNA (1488bp) protein (496aa)
Outer membrane efflux protein n=4 Tax=Parabacteroides RepID=A7AIE7_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:CDD13527.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
outer membrane protein TolC
L3_133_000G1_scaffold_339_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5947..9213
DNA (3267bp) protein (1089aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQH3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13528.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
drug efflux protein
L3_133_000G1_scaffold_339_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9543..11369
DNA (1827bp) protein (609aa)
Tetratricopeptide repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X354_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD13529.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000G1_scaffold_339_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11446..13275)
DNA (1830bp) protein (610aa)
Heparinase II/III-like protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW58_9PORP
Heparinase II/III-like protein {ECO:0000313|EMBL:CDD13530.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Heparinase II/III-like protein.
L3_133_000G1_scaffold_339_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13654..16872
DNA (3219bp) protein (1073aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Carbamoyl-phosphate synthase, large subunit n=2 Tax=Parabacteroides RepID=K5ZCQ8_9PORP
glutamine-dependent carbamyl phosphate synthetase
L3_133_000G1_scaffold_339_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16950..19007
DNA (2058bp) protein (686aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7A9I5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88575.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_133_000G1_scaffold_339_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19206..20579
DNA (1374bp) protein (458aa)
Tat pathway signal sequence domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQH5_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDD13533.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000G1_scaffold_339_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20673..21836)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A7A9I3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13534.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000G1_scaffold_339_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22836..23954)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZCQ4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08980.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
iron(III) ABC transporter periplasmic iron-binding protein
L3_133_000G1_scaffold_339_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23957..25363)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z0F3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08979.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_133_000G1_scaffold_339_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25384..27399)
DNA (2016bp) protein (672aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZZX5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08978.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
vitamin B12 receptor
L3_133_000G1_scaffold_339_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27979..29496
DNA (1518bp) protein (506aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X659_9PORP
L3_133_000G1_scaffold_339_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29505..29738
DNA (234bp) protein (78aa)
ATP synthase F1, epsilon subunit n=2 Tax=Parabacteroides RepID=K5ZC52_9PORP
ATP synthase F1, epsilon subunit {ECO:0000313|EMBL:EKN08976.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ATP synthase subunit epsilon
L3_133_000G1_scaffold_339_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29754..30182
DNA (429bp) protein (143aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7A9H3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14622.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000G1_scaffold_339_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30160..31218
DNA (1059bp) protein (353aa)
ATP synthase subunit a n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XE87_9PORP
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATP synthase subunit A
L3_133_000G1_scaffold_339_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31254..31508
DNA (255bp) protein (85aa)
ATP synthase F0, C subunit n=7 Tax=Parabacteroides RepID=A7A9H1_9PORP
ATP synthase subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_133_000G1_scaffold_339_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31522..32022
DNA (501bp) protein (167aa)
ATP synthase subunit b n=4 Tax=Parabacteroides RepID=A7A9H0_9PORP
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATP synthase subunit B
L3_133_000G1_scaffold_339_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32026..32568
DNA (543bp) protein (181aa)
ATP synthase subunit delta n=3 Tax=Parabacteroides RepID=A7A9G9_9PORP
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
F0F1 ATP synthase subunit delta
L3_133_000G1_scaffold_339_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32583..34163
DNA (1581bp) protein (527aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZCP5_9PORP
L3_133_000G1_scaffold_339_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34216..35073
DNA (858bp) protein (286aa)
ATP synthase gamma chain n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XE83_9PORP
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
F0F1 ATP synthase subunit gamma
L3_133_000G1_scaffold_339_24
unknown

Not on your lists

35088..35177
DNA (90bp) protein (30aa)

This feature has no annotations

L3_133_000G1_scaffold_339_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35838..38045
DNA (2208bp) protein (736aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y600_9PORP
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDD13862.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_133_000G1_scaffold_339_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38150..38650
DNA (501bp) protein (167aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=4 Tax=Parabacteroides RepID=A7A9G5_9PORP
L3_133_000G1_scaffold_339_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38689..40038)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7A9G4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08964.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_133_000G1_scaffold_339_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40193..41725)
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Carboxyl transferase domain protein n=2 Tax=Parabacteroides RepID=A7A9G3_9PORP
Carboxyl transferase domain protein {ECO:0000313|EMBL:CDD13865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_133_000G1_scaffold_339_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41703..42242)
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Y6Z6_9PORP
Biotin-requiring enzyme {ECO:0000313|EMBL:CDD13866.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
biotin/lipoyl attachment domain-containing protein
L3_133_000G1_scaffold_339_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42256..43773)
DNA (1518bp) protein (506aa)
acetyl-CoA carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y607_9PORP
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:CDD13867.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Displaying items 1-30 of 54 in total

View Taxonomy