ggKbase home page

L3_133_000G1_scaffold_3653

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000G1_scaffold_3653_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..119
DNA (117bp) protein (39aa)
Sigma-70 region 2 n=115 Tax=Clostridium difficile RepID=G6BW76_CLODI
sporulation sigma factor SigK
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EQH98468.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_133_000G1_scaffold_3653_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

635..829
DNA (195bp) protein (65aa)
Uncharacterized protein n=142 Tax=Clostridium difficile RepID=T3HRY0_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CCK93394.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L3_133_000G1_scaffold_3653_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(931..1440)
DNA (510bp) protein (170aa)
Teicoplanin resistance protein n=83 Tax=Clostridium difficile RepID=Q18BA1_CLOD6
vanZ; teicoplanin resistance protein
Teicoplanin resistance protein {ECO:0000313|EMBL:CAJ68095.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_133_000G1_scaffold_3653_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1760..2161)
DNA (402bp) protein (134aa)
Penicillinase repressor family protein n=6 Tax=Clostridium difficile RepID=T4PNV2_CLODI
Penicillinase repressor family protein {ECO:0000313|EMBL:EQE67404.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Transcriptional regulator, beta-lactamsrepressor Phage-type
L3_133_000G1_scaffold_3653_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2597..2872
DNA (276bp) protein (92aa)
Uncharacterized protein n=52 Tax=Clostridium difficile RepID=G6BW71_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQH98473.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
hypothetical protein
L3_133_000G1_scaffold_3653_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3220..3537
DNA (318bp) protein (106aa)
Putative phage protein n=2 Tax=Clostridium difficile RepID=U3Y2E9_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CAJ68093.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_133_000G1_scaffold_3653_7
unknown

Not on your lists

4536..4937
DNA (402bp) protein (134aa)

This feature has no annotations

L3_133_000G1_scaffold_3653_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4929..5264)
DNA (336bp) protein (112aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PNU7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26094.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_133_000G1_scaffold_3653_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5391..5774
DNA (384bp) protein (128aa)
Uncharacterized protein n=97 Tax=Clostridium difficile RepID=G6BMS4_CLODI
hypothetical protein
Putative phage protein {ECO:0000313|EMBL:EQE67542.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_133_000G1_scaffold_3653_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6077..6352)
DNA (276bp) protein (92aa)
Uncharacterized protein n=13 Tax=Clostridium difficile RepID=G6BMS5_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26096.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_133_000G1_scaffold_3653_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6559..6672)
DNA (114bp) protein (38aa)
Uncharacterized protein n=85 Tax=Clostridium difficile RepID=T3HRA0_CLODC
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CDS86451.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG97928.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_133_000G1_scaffold_3653_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6992..7243)
DNA (252bp) protein (84aa)
Uncharacterized protein n=124 Tax=Clostridium difficile RepID=C9XNW2_CLODC
hypothetical protein
Putative phage protein {ECO:0000313|EMBL:CCK93387.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L3_133_000G1_scaffold_3653_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7489..7644)
DNA (156bp) protein (52aa)
Uncharacterized protein n=52 Tax=Clostridium difficile RepID=T3HUA4_CLODC
putative phage regulator
Phage anti-repressor {ECO:0000313|EMBL:CKG97890.1}; Putative phage regulator {ECO:0000313|EMBL:CEJ97807.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_133_000G1_scaffold_3653_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8355..8579
DNA (225bp) protein (75aa)
DNA-binding helix-turn-helix protein n=42 Tax=Clostridium difficile RepID=G6BW61_CLODI
Toxin-antitoxin system, antitoxin component, Xre domain protein {ECO:0000313|EMBL:EHJ26100.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
5; helix-turn-helix family protein
L3_133_000G1_scaffold_3653_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10441..11346)
DNA (906bp) protein (302aa)
Peptidase propeptide and YPEB domain protein n=2 Tax=Clostridium difficile RepID=T4PNV5_CLODI
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:EQH98481.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
cwp26; putative cell surface protein cwp26
Displaying 15 items

View Taxonomy