ggKbase home page

L3_133_000G1_scaffold_1551

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000G1_scaffold_1551_1
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(129..662)
DNA (534bp) protein (178aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=C9L6N6_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX22080.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_133_000G1_scaffold_1551_2
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(653..1276)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6REV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC47428.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_133_000G1_scaffold_1551_3
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1266..2114)
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3K8_9CLOT
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_133_000G1_scaffold_1551_4
unknown

Not on your lists

comp(2312..2596)
DNA (285bp) protein (95aa)

This feature has no annotations

L3_133_000G1_scaffold_1551_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(2664..3725)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XS02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12464.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_133_000G1_scaffold_1551_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3963..5693)
DNA (1731bp) protein (577aa)
Multidrug ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YZE4_9CLOT
Multidrug ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGB92799.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC transporter permease
L3_133_000G1_scaffold_1551_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6132..7166)
DNA (1035bp) protein (345aa)
Putative transcriptional regulator, ArsR family n=1 Tax=Clostridium sp. D5 RepID=F0YZE8_9CLOT
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:EGB92803.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_133_000G1_scaffold_1551_8
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(7341..7676)
DNA (336bp) protein (112aa)
protein from nitrogen regulatory protein P-II n=1 Tax=Blautia producta RepID=UPI00037439B0
Uncharacterized protein {ECO:0000313|EMBL:CDC93087.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
hypothetical protein
L3_133_000G1_scaffold_1551_9
unknown

Not on your lists

comp(7698..8039)
DNA (342bp) protein (114aa)

This feature has no annotations

L3_133_000G1_scaffold_1551_10
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8036..8992)
DNA (957bp) protein (319aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VTW0_9CLOT
hypothetical protein
L3_133_000G1_scaffold_1551_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9418..10545)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=3 Tax=Clostridium bolteae RepID=A8S1P1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP13552.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Glycoside Hydrolase Family 105-like unsaturated rhamnogalacturonyl hydrolase
L3_133_000G1_scaffold_1551_12
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10948..11835
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9KDI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS41532.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
LacI family transcriptional regulator
L3_133_000G1_scaffold_1551_13
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11825..13132)
DNA (1308bp) protein (436aa)
TRAP transporter, DctM subunit n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K5J8_9FIRM
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EOS41531.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_133_000G1_scaffold_1551_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13134..13601)
DNA (468bp) protein (156aa)
Uncharacterized protein n=5 Tax=Clostridium RepID=N9XI47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP13554.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_133_000G1_scaffold_1551_15
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13662..14684)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8S1P4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP13555.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_133_000G1_scaffold_1551_16
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(15060..15872)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y1A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA14981.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
xylose isomerase domain-containing protein TIM barrel
L3_133_000G1_scaffold_1551_17
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15970..16761)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J7K7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS30185.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
hypothetical protein
L3_133_000G1_scaffold_1551_18
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16746..17258)
DNA (513bp) protein (171aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J858_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS30186.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
putative RNA polymerase sigma factor
L3_133_000G1_scaffold_1551_19
unknown

Not on your lists

17689..18399
DNA (711bp) protein (237aa)

This feature has no annotations

L3_133_000G1_scaffold_1551_20
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

18338..18700
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY27933.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
signal transduction histidine kinase
L3_133_000G1_scaffold_1551_21
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18862..19581)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71053.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L3_133_000G1_scaffold_1551_22
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19600..20718)
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B631_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90973.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
hypothetical protein
L3_133_000G1_scaffold_1551_23
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20721..21302)
DNA (582bp) protein (194aa)
Putative RNA polymerase sigma factor 70 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LFE7_ACEWD
putative RNA polymerase sigma factor 70
Putative RNA polymerase sigma factor 70 {ECO:0000313|EMBL:AFA49434.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_133_000G1_scaffold_1551_24
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21678..22370)
DNA (693bp) protein (231aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J490_9FIRM
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EOS28796.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
L3_133_000G1_scaffold_1551_25
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22372..24048)
DNA (1677bp) protein (559aa)
araB; AraB (EC:2.7.1.16)
Ribulokinase {ECO:0000256|HAMAP-Rule:MF_00520, ECO:0000256|RuleBase:RU003455}; EC=2.7.1.16 {ECO:0000256|HAMAP-Rule:MF_00520, ECO:0000256|RuleBase:RU003455};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037F6A91
L3_133_000G1_scaffold_1551_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(24168..24989)
DNA (822bp) protein (274aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RE99_9FIRM
Displaying 26 items

View Taxonomy