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L3_133_000M1_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_41_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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317..589
DNA (273bp) protein (91aa)
Replication initiator protein A n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D4Q1_CLOSY
Replication initiator protein A {ECO:0000313|EMBL:ERI74536.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Replication initiator protein A (RepA) N-terminus.
L3_133_000M1_scaffold_41_2
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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730..1071
DNA (342bp) protein (114aa)
Plasmid recombination enzyme (Fragment) n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SQ71_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:EFP60405.1}; Flags: Fragment;; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Plasmid recombination enzyme.
L3_133_000M1_scaffold_41_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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1081..1317
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y8L0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12728.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_133_000M1_scaffold_41_4
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1301..1510
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 2_2_44A RepID=G1VPJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75422.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
hypothetical protein
L3_133_000M1_scaffold_41_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1626..3137
DNA (1512bp) protein (504aa)
Site-specific recombinases, DNA invertase Pin homologs n=4 Tax=Clostridiales RepID=D4MS78_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Uncharacterized protein {ECO:0000313|EMBL:EDP13062.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L3_133_000M1_scaffold_41_6
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3344..4873
DNA (1530bp) protein (510aa)
alpha-L-fucosidase (EC:3.2.1.51)
Putative alpha-1 3/4-fucosidase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TNK4_9CLOT
Putative alpha-1 3/4-fucosidase {ECO:0000313|EMBL:CCZ60566.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
L3_133_000M1_scaffold_41_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5062..7392
DNA (2331bp) protein (777aa)
protein serine/threonine phosphatase (EC:3.1.3.16)
stage II sporulation protein E n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037D48E1
Putative stage II sporulation protein E {ECO:0000313|EMBL:EJF41135.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_133_000M1_scaffold_41_8
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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comp(7776..9605)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RHD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34196.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
ABC transporter
L3_133_000M1_scaffold_41_9
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(9595..11448)
DNA (1854bp) protein (618aa)
ABC transporter n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5QYZ5_9FIRM
ABC transporter {ECO:0000313|EMBL:CCZ34195.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
ABC transporter ATP-binding protein/permease
L3_133_000M1_scaffold_41_10
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12167..12427)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EFC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA88767.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L3_133_000M1_scaffold_41_11
unknown

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comp(12366..12836)
DNA (471bp) protein (157aa)

This feature has no annotations

L3_133_000M1_scaffold_41_12
unknown

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comp(12836..12967)
DNA (132bp) protein (44aa)

This feature has no annotations

L3_133_000M1_scaffold_41_13
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13201..14706)
DNA (1506bp) protein (502aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BLI7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI73095.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ABC transporter ATP-binding protein
L3_133_000M1_scaffold_41_14
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15023..15553
DNA (531bp) protein (177aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F701_CLOS4
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERJ01057.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
N-acetyltransferase GCN5
L3_133_000M1_scaffold_41_15
unknown

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comp(15712..15909)
DNA (198bp) protein (66aa)

This feature has no annotations

L3_133_000M1_scaffold_41_16
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16368..16583
DNA (216bp) protein (72aa)
Cold-shock DNA-binding protein family n=2 Tax=Clostridiales RepID=D7GQ48_9FIRM
cold-shock DNA-binding protein family
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:CCY09607.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_133_000M1_scaffold_41_17
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17048..17356)
DNA (309bp) protein (103aa)
Helix-turn-helix n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GS55_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL40631.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_133_000M1_scaffold_41_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17558..18232)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037E4367
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF42189.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Fe(3+)-transporting ATPase
L3_133_000M1_scaffold_41_19
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(18229..19038)
DNA (810bp) protein (270aa)
ABC transporter, permease protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H927_9CLOT
binding-protein-dependent transport system inner membrane protein
Tax=BJP_08E140C01_Actinomycetales_70_11
L3_133_000M1_scaffold_41_20
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19016..20056)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CYD0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76561.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_133_000M1_scaffold_41_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20142..20849)
DNA (708bp) protein (236aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTY9_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDN00336.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
cyclic nucleotide-binding protein
L3_133_000M1_scaffold_41_22
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21091..21279)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90623.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_133_000M1_scaffold_41_23
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21473..21733)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N073_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
SSU ribosomal protein S20P
L3_133_000M1_scaffold_41_24
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21923..22816
DNA (894bp) protein (298aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
spore protease (EC:3.4.24.78)
Germination protease n=2 Tax=Clostridium RepID=A7VVA9_9CLOT
L3_133_000M1_scaffold_41_25
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22948..24144
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HX59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41600.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
stage II sporulation protein P
L3_133_000M1_scaffold_41_26
unknown

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24158..24496
DNA (339bp) protein (113aa)

This feature has no annotations

L3_133_000M1_scaffold_41_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24738..27284)
DNA (2547bp) protein (849aa)
Negative regulator of genetic competence ClpC/MecB n=1 Tax=Clostridium sp. CAG:413 RepID=R6NCH6_9CLOT
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:CDC09858.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ATPase AAA-2 domain-containing protein
L3_133_000M1_scaffold_41_28
unknown

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comp(27262..27471)
DNA (210bp) protein (70aa)

This feature has no annotations

L3_133_000M1_scaffold_41_29
unknown

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27630..27791
DNA (162bp) protein (54aa)

This feature has no annotations

L3_133_000M1_scaffold_41_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28056..28955
DNA (900bp) protein (300aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IX82_9FIRM
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:CDB42587.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying items 1-30 of 118 in total

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