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L3_133_000M1_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_66_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..1726)
DNA (1725bp) protein (575aa)
Lacto-N-biose phosphorylase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MVN4_BIFL1
lacto-N-biose phosphorylase
Uncharacterized protein {ECO:0000313|EMBL:ADH01117.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_66_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1945..2895)
DNA (951bp) protein (317aa)
Permease of ABC transporter for sugars n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW62_BIFLJ
sugar ABC transporter permease
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:KFI73665.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_133_000M1_scaffold_66_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2895..3866)
DNA (972bp) protein (324aa)
Permease of ABC transporter for sugars n=2 Tax=Bifidobacterium longum RepID=Q8G3W4_BIFLO
MalF-type ABC sugar transporter permease
MalF-type ABC sugar transport systems permease component {ECO:0000313|EMBL:ADH01119.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_66_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4057..5373)
DNA (1317bp) protein (439aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW64_BIFLJ
family 1 extracellular solute-binding protein
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:ADH01120.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_66_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5729..5869)
DNA (141bp) protein (47aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=I3B6D6_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEQ55271.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_133_000M1_scaffold_66_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6380..7666)
DNA (1287bp) protein (429aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Serine--tRNA ligase n=13 Tax=Bifidobacterium RepID=SYS_BIFLO
seryl-tRNA synthase
L3_133_000M1_scaffold_66_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7900..9081
DNA (1182bp) protein (394aa)
Sphingosine kinase n=9 Tax=Bifidobacterium RepID=B3DQG6_BIFLD
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KEY21478.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
kinase
L3_133_000M1_scaffold_66_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9086..9946)
DNA (861bp) protein (287aa)
Transcriptional antiterminator, BglG family n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DC22_BIFLN
PRD domain protein {ECO:0000313|EMBL:EEQ55267.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
transcription antiterminator BglG
L3_133_000M1_scaffold_66_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9943..12291)
DNA (2349bp) protein (783aa)
PtsG n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3X0_BIFLO
PtsG {ECO:0000313|EMBL:AAN25420.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
ptsG; hypothetical protein
L3_133_000M1_scaffold_66_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12790..14340
DNA (1551bp) protein (517aa)
Sugar transport protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=F8ASI5_BIFLN
sugar transport protein
Putative metabolite transport protein CsbC {ECO:0000313|EMBL:CCK35623.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_133_000M1_scaffold_66_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14428..16104
DNA (1677bp) protein (559aa)
Phosphoglucomutase, alpha-D-glucose phosphate-specific {ECO:0000313|EMBL:EIJ27284.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EIJ27284.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Phosphoglucomutase, alpha-D-glucose phosphate-specific n=9 Tax=Bifidobacterium RepID=D6ZW80_BIFLJ
alpha-D-glucose phosphate-specific phosphoglucomutase
L3_133_000M1_scaffold_66_12
unknown

Not on your lists

16285..16404
DNA (120bp) protein (40aa)

This feature has no annotations

L3_133_000M1_scaffold_66_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16833..17930)
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R3D1_BIFLM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44238.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_133_000M1_scaffold_66_14
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18161..18583
DNA (423bp) protein (141aa)
Transcriptional regulator, BadM/Rrf2 family n=15 Tax=Bifidobacterium RepID=D6DC26_BIFLN
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:CCY94959.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_133_000M1_scaffold_66_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18717..20387
DNA (1671bp) protein (557aa)
Class I pyridine nucleotide-disulfideoxidoreductase {ECO:0000313|EMBL:KFI68476.1}; EC=1.8.1.4 {ECO:0000313|EMBL:KFI68476.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Possible class I pyridine nucleotide-disulfideoxidoreductase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MU45_9BIFI
class I pyridine nucleotide-disulfideoxidoreductase
L3_133_000M1_scaffold_66_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20546..20698)
DNA (153bp) protein (51aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=I3B6Z2_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71842.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_133_000M1_scaffold_66_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21074..21910
DNA (837bp) protein (279aa)
Ribonuclease H {ECO:0000313|EMBL:KFI68474.1}; EC=3.1.26.4 {ECO:0000313|EMBL:KFI68474.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Ribonuclease H n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW85_BIFLJ
ribonuclease H
L3_133_000M1_scaffold_66_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22041..22739
DNA (699bp) protein (233aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
Ribose-5-phosphate isomerase A n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW86_BIFLJ
ribose 5-phosphate isomerase
L3_133_000M1_scaffold_66_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22890..22979)
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
L3_133_000M1_scaffold_66_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23171..23803)
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=D6ZW87_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI68471.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_133_000M1_scaffold_66_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23931..25469
DNA (1539bp) protein (513aa)
DNA repair protein RadA n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW88_BIFLJ
DNA repair protein RadA
DNA repair protein RadA {ECO:0000313|EMBL:ADH01144.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_66_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25484..26608)
DNA (1125bp) protein (375aa)
RiBF n=9 Tax=Bifidobacterium RepID=E4R3C2_BIFLM
riboflavin kinase
FAD synthase {ECO:0000313|EMBL:KEY21465.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_133_000M1_scaffold_66_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26706..27869)
DNA (1164bp) protein (388aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium longum RepID=E4R3C1_BIFLM
truB; trub
L3_133_000M1_scaffold_66_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27871..28347)
DNA (477bp) protein (159aa)
Ribosome-binding factor A n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW91_BIFLJ
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_133_000M1_scaffold_66_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28498..31425)
DNA (2928bp) protein (976aa)
Translation initiation factor IF-2 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=IF2_BIFLS
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
L3_133_000M1_scaffold_66_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31695..32762)
DNA (1068bp) protein (356aa)
NusA antitermination factor n=6 Tax=Bifidobacterium RepID=D6ZW93_BIFLJ
nusA; NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_133_000M1_scaffold_66_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32970..33698
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=S3EJ15_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ67315.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_133_000M1_scaffold_66_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33739..34782)
DNA (1044bp) protein (348aa)
RbsR-type transcription regulator/ribose operon repressor n=6 Tax=Bifidobacterium longum RepID=B3DQE7_BIFLD
LacI family transcription regulator
Regulatory protein, LacI {ECO:0000313|EMBL:ADH01151.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_66_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35315..36883)
DNA (1569bp) protein (523aa)
Exo-alpha-(1->6)-L-arabinofuranosidase n=11 Tax=Bifidobacterium RepID=16ABF_BIFLN
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:AIW44251.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
alpha-L-arabinosidase
L3_133_000M1_scaffold_66_30
unknown

Not on your lists

comp(37429..37527)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying items 1-30 of 107 in total

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