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L3_133_000M1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_71_1
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(109..2703)
DNA (2595bp) protein (865aa)
Putative membrane protein (DUF2339) n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M076_CLOCD
hypothetical protein
Putative membrane protein (DUF2339) {ECO:0000313|EMBL:AEV66883.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_133_000M1_scaffold_71_2
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2942..4252)
DNA (1311bp) protein (437aa)
Putative ATP-binding region ATPase domain protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZKJ4_9CLOT
Putative ATP-binding region ATPase domain protein {ECO:0000313|EMBL:CCQ95557.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
ATP-binding protein
L3_133_000M1_scaffold_71_3
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4274..4981)
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=D6MD07_9CLOT
LytTr DNA-binding domain protein {ECO:0000313|EMBL:ERI65238.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
response regulator receiver domain protein
L3_133_000M1_scaffold_71_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5404..5886)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium difficile (strain R20291) RepID=C9YME8_CLODR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04549.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_133_000M1_scaffold_71_5
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5920..7941)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JKP2_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ83295.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_133_000M1_scaffold_71_6
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7931..8698)
DNA (768bp) protein (256aa)
ABC transporter n=2 Tax=Anaerostipes RepID=E5VVP5_9FIRM
ABC transporter {ECO:0000313|EMBL:EFV22104.1}; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
hypothetical protein
L3_133_000M1_scaffold_71_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8881..9900)
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECJ9_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_133_000M1_scaffold_71_8
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9932..10597)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GFV3_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO38437.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_133_000M1_scaffold_71_9
unknown

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comp(10566..11072)
DNA (507bp) protein (169aa)

This feature has no annotations

L3_133_000M1_scaffold_71_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11065..13260)
DNA (2196bp) protein (732aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
DNA topoisomerase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NUC0_9CLOT
DNA topoisomerase III
L3_133_000M1_scaffold_71_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13275..14663)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41999.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_133_000M1_scaffold_71_12
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14660..15514)
DNA (855bp) protein (285aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N5J1_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH05506.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
L3_133_000M1_scaffold_71_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15546..16043)
DNA (498bp) protein (166aa)
Deoxycytidylate deaminase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PJF3_9CLOT
Deoxycytidylate deaminase {ECO:0000313|EMBL:CDC09912.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
cytidine deaminase
L3_133_000M1_scaffold_71_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16307..17569
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01421.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_133_000M1_scaffold_71_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17779..19110
DNA (1332bp) protein (444aa)
Glutamine synthetase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IY30_9FIRM
Glutamine synthetase {ECO:0000313|EMBL:CDB42882.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
glutamine synthetase, type I
L3_133_000M1_scaffold_71_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19779..20546
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I897_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41641.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_133_000M1_scaffold_71_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20564..21826
DNA (1263bp) protein (421aa)
Aminotransferase class-III n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HX88_9FIRM
Aminotransferase class-III {ECO:0000313|EMBL:CDB41640.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
aminotransferase class-III
L3_133_000M1_scaffold_71_18
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21931..22800
DNA (870bp) protein (290aa)
Transketolase domain protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y388_9FIRM
Transketolase domain protein {ECO:0000313|EMBL:CDA19289.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
transketolase
L3_133_000M1_scaffold_71_19
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22803..23813
DNA (1011bp) protein (337aa)
tkt2; transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUT6_9FIRM
Transketolase {ECO:0000313|EMBL:CDB41638.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_133_000M1_scaffold_71_20
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23857..24669
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MYI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90027.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_133_000M1_scaffold_71_21
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

24964..25617
DNA (654bp) protein (218aa)
Transcriptional regulator, TetR family n=2 Tax=Leptospira licerasiae RepID=I0XVU6_9LEPT
TetR family transcriptional regulator
Tax=BJP_IG2069_Spirochaetales_48_31
L3_133_000M1_scaffold_71_22
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25853..27232)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C708_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDS72795.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
hypothetical protein
L3_133_000M1_scaffold_71_23
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27225..27821)
DNA (597bp) protein (199aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C707_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS72794.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
L3_133_000M1_scaffold_71_24
unknown

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comp(28077..28727)
DNA (651bp) protein (217aa)

This feature has no annotations

L3_133_000M1_scaffold_71_25
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28775..30439)
DNA (1665bp) protein (555aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUL6_9FIRM
L3_133_000M1_scaffold_71_26
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30426..32105)
DNA (1680bp) protein (560aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Glutamate--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YRH7_9FIRM
glutamyl-tRNA synthetase
L3_133_000M1_scaffold_71_27
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32334..33140)
DNA (807bp) protein (269aa)
amidohydrolase 2 (EC:3.5.1.-)
Amidohydrolase 2 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYA8_9FIRM
Amidohydrolase 2 {ECO:0000313|EMBL:CDB42883.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_133_000M1_scaffold_71_28
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33178..35016)
DNA (1839bp) protein (613aa)
GTP-binding protein TypA n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XVM2_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:CDA19143.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
GTP-binding protein TypA/BipA
L3_133_000M1_scaffold_71_29
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35366..36544
DNA (1179bp) protein (393aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
alr; Alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI56_9CLOT
L3_133_000M1_scaffold_71_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36670..38046
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45995.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
MATE efflux family protein
Displaying items 1-30 of 77 in total

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