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L3_133_000M1_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_86_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..375)
DNA (375bp) protein (125aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEQ55451.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEQ55451.1};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Bifunctional PLP-dependent enzyme n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MWX5_9BIFI
aspartate aminotransferase
L3_133_000M1_scaffold_86_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(418..843)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=C2GVR4_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI80884.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L3_133_000M1_scaffold_86_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

893..4204
DNA (3312bp) protein (1104aa)
ileS; isoleucyl-tRNA synthase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Isoleucine--tRNA ligase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DRL6_BIFLD
L3_133_000M1_scaffold_86_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4399..5097
DNA (699bp) protein (233aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EBQ9_BIFLI
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EEQ55453.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
truncated type I restriction system specificity protein
L3_133_000M1_scaffold_86_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5088..6017
DNA (930bp) protein (310aa)
Phage integrase family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I253_BIFLN
Phage integrase family protein {ECO:0000313|EMBL:CCK35439.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
phage integrase
L3_133_000M1_scaffold_86_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6010..6486)
DNA (477bp) protein (159aa)
Restriction-modification system specificity subunit n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV69_BIFL1
restriction-modification system specificity subunit
Restriction-modification system specificity subunit {ECO:0000313|EMBL:BAJ71663.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_133_000M1_scaffold_86_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6583..7518
DNA (936bp) protein (312aa)
Restriction endonuclease family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I3D1_BIFLN
Restriction endonuclease family protein {ECO:0000313|EMBL:CCK35438.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
mrr; restriction endonuclease
L3_133_000M1_scaffold_86_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7550..10117
DNA (2568bp) protein (856aa)
Type I restriction-modification system, M subunit n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B135_BIFLN
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KEY33544.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
DNA methylase
L3_133_000M1_scaffold_86_9
Bifidobacterium callitrichos, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10117..11358
DNA (1242bp) protein (414aa)
Restriction endonuclease S subunit n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXD9_BIFBP
restriction endonuclease S subunit
HsdS-like protein of Type I restriction-modification system {ECO:0000313|EMBL:KFI51313.1}; TaxID=1437609 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium callitrichos DSM 23973.;"
L3_133_000M1_scaffold_86_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11373..12920
DNA (1548bp) protein (516aa)
Putative transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV68_BIFL1
Putative transcriptional regulator {ECO:0000313|EMBL:BAJ71662.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
transcriptional regulator
L3_133_000M1_scaffold_86_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12917..16204
DNA (3288bp) protein (1096aa)
Type I site-specific restriction-modification system R subunit n=4 Tax=Bifidobacterium RepID=B3DRM5_BIFLD
Type I site-specific restriction-modification system R subunit {ECO:0000313|EMBL:ACD99407.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
deoxyribonuclease
L3_133_000M1_scaffold_86_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16272..17492)
DNA (1221bp) protein (407aa)
S-adenosylmethionine synthase {ECO:0000255|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000255|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000255|HAMAP-Rule:MF_00086};; MAT {ECO:0000255|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000255|HAMAP-Rule:MF_00086}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
S-adenosylmethionine synthase n=2 Tax=Bifidobacterium longum RepID=METK_BIFLD
metK; S-adenosylmethionine synthetase
L3_133_000M1_scaffold_86_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17770..18054)
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
DNA-directed RNA polymerase subunit omega n=17 Tax=Bifidobacterium RepID=RPOZ_BIFLD
DNA-directed RNA polymerase omega subunit
L3_133_000M1_scaffold_86_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18349..20118
DNA (1770bp) protein (590aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Dihydroxy-acid dehydratase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVP2_BIFLJ
dihydroxy-acid dehydratase
L3_133_000M1_scaffold_86_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20210..21196)
DNA (987bp) protein (329aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Methionyl-tRNA formyltransferase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2P5_BIFLN
methionyl-tRNA formyltransferase
L3_133_000M1_scaffold_86_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21220..21924)
DNA (705bp) protein (235aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) n=2 Tax=Bifidobacterium longum RepID=V6XXJ4_BIFLN
HAD family hydrolase {ECO:0000313|EMBL:KEY21631.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
HAD family hydrolase
L3_133_000M1_scaffold_86_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21983..24295)
DNA (2313bp) protein (771aa)
Primosome assembly protein PriA n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MXV5_9BIFI
Primosome assembly protein PriA {ECO:0000313|EMBL:KEY33553.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
primosome assembly protein PriA
L3_133_000M1_scaffold_86_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24335..25057)
DNA (723bp) protein (241aa)
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:CCK35427.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCK35427.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Phosphoserine phosphatase SerB n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2F2_BIFLN
phosphoserine phosphatase
L3_133_000M1_scaffold_86_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25108..25806
DNA (699bp) protein (233aa)
DedA family protein n=11 Tax=Bifidobacterium RepID=V6XXP2_BIFLN
membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:ACD99415.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_133_000M1_scaffold_86_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25867..27432
DNA (1566bp) protein (522aa)
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BHY8_BIFLN
rpt1; ATPase
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_133_000M1_scaffold_86_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27454..29121
DNA (1668bp) protein (556aa)
Proteasome accessory factor PafA2 n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B2Z7_BIFLN
ligase
Ligase {ECO:0000313|EMBL:AIW44112.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_133_000M1_scaffold_86_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29133..30029
DNA (897bp) protein (299aa)
Possible inositol monophosphatase n=15 Tax=Bifidobacterium RepID=Q8G3G4_BIFLO
inositol monophosphatase
Putative inositol monophosphatase {ECO:0000313|EMBL:BAJ71650.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_133_000M1_scaffold_86_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30096..30323
DNA (228bp) protein (76aa)
Prokaryotic ubiquitin-like protein Pup n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDN3_BIFLI
Ubiquitin-like protein Pup {ECO:0000313|EMBL:EEQ56127.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_133_000M1_scaffold_86_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30323..31783
DNA (1461bp) protein (487aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Pup--protein ligase n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B2W6_BIFLN
hypothetical protein
L3_133_000M1_scaffold_86_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31899..32180)
DNA (282bp) protein (94aa)
DNA-binding protein HB1 n=20 Tax=Bifidobacterium RepID=DBH1_BIFLO
hup; DNA-binding protein HU
DNA-binding protein HB1 {ECO:0000313|EMBL:EIJ30978.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_133_000M1_scaffold_86_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32326..34887)
DNA (2562bp) protein (854aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDN6_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ56130.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_133_000M1_scaffold_86_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35001..36437)
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase n=3 Tax=Bifidobacterium longum RepID=E8MEK2_BIFL2
adenylosuccinate lyase
Adenylosuccinate lyase {ECO:0000313|EMBL:BAJ67129.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_133_000M1_scaffold_86_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36570..37211
DNA (642bp) protein (214aa)
Predicted membrane protein n=14 Tax=Bifidobacterium RepID=D6DBI9_BIFLN
hypothetical protein
Cobalt ABC transporter, permease protein {ECO:0000313|EMBL:EIJ25121.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_133_000M1_scaffold_86_29
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37399..37512)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MX19_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY96315.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_133_000M1_scaffold_86_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37978..39582)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=Q8G3F7_BIFLO
hypothetical protein
PGAP1-like domain protein {ECO:0000313|EMBL:EIJ30974.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Displaying items 1-30 of 69 in total

View Taxonomy