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L3_133_000M1_scaffold_181

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_181_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..284)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:BAR03456.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_133_000M1_scaffold_181_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(290..610)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSY7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70488.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_133_000M1_scaffold_181_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(613..1689)
DNA (1077bp) protein (359aa)
Site-specific recombinase, phage integrase family n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSY8_9BIFI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEG70489.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR03458.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Site-specific recombinase XerD
L3_133_000M1_scaffold_181_4
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1693..1893)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSY9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70490.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_133_000M1_scaffold_181_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2085..2618
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSZ0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70491.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Helix-turn-helix.
L3_133_000M1_scaffold_181_6
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2814..4142)
DNA (1329bp) protein (443aa)
GMP synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00008728}; EC=6.3.5.2 {ECO:0000256|SAAS:SAAS00008728};; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
GMP synthase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GPX2_EUBLK
GMP synthase
L3_133_000M1_scaffold_181_7
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4199..5206)
DNA (1008bp) protein (336aa)
diaminopimelate dehydrogenase (EC:1.4.1.16)
Diaminopimelate dehydrogenase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G9U1_9FIRM
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:EFW05200.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L3_133_000M1_scaffold_181_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5606..6796)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K4V3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43191.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_133_000M1_scaffold_181_9
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7043..8212
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CI57_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA75345.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
peptidase family M1
L3_133_000M1_scaffold_181_10
unknown

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comp(8704..9081)
DNA (378bp) protein (126aa)

This feature has no annotations

L3_133_000M1_scaffold_181_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9078..10613)
DNA (1536bp) protein (512aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HYR9_9FIRM
GMP synthase large subunit
L3_133_000M1_scaffold_181_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10649..11926)
DNA (1278bp) protein (426aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6S6_9FIRM
L3_133_000M1_scaffold_181_13
unknown

Not on your lists

comp(12687..12848)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_133_000M1_scaffold_181_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13887..14753
DNA (867bp) protein (289aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IB05_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDB42601.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_133_000M1_scaffold_181_15
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14936..15385)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BEF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI70208.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
GCN5-related N-acetyltransferase
L3_133_000M1_scaffold_181_16
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15537..15917)
DNA (381bp) protein (127aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQQ3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDN01399.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
XRE family transcriptional regulator
L3_133_000M1_scaffold_181_17

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comp(16099..16806)
DNA (708bp) protein (236aa)
F420-0:Gamma-glutamyl ligase superfamily n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L764_9FIRM
Gamma-glutamyl ligase superfamily {ECO:0000313|EMBL:KKR54029.1}; TaxID=1618816 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_23.;"
F420-0:gamma-glutamyl ligase-like protein
L3_133_000M1_scaffold_181_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(16845..18674)
DNA (1830bp) protein (610aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MWZ7_9FIRM
glucosamine--fructose-6-phosphate aminotransferase, isomerizing
L3_133_000M1_scaffold_181_19
unknown

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comp(18807..19010)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_133_000M1_scaffold_181_20
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19421..20986
DNA (1566bp) protein (522aa)
Alpha amylase catalytic region n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PUR3_9FIRM
Alpha amylase catalytic region {ECO:0000313|EMBL:CCZ19923.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
alpha amylase
L3_133_000M1_scaffold_181_21
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21082..22944
DNA (1863bp) protein (621aa)
Putative acetyltransferase/hydrolase with alpha/beta hydrolase fold n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8W7_9FIRM
Putative acetyltransferase/hydrolase with alpha/beta hydrolase fold {ECO:0000313|EMBL:CDB42924.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_133_000M1_scaffold_181_22
unknown

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23019..23132
DNA (114bp) protein (38aa)

This feature has no annotations

L3_133_000M1_scaffold_181_23
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23241..24623
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KNU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY66754.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Radical SAM domain-containing protein
L3_133_000M1_scaffold_181_24
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24738..25706)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2FST1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGW39295.1}; TaxID=913865 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. OT.;"
hypothetical protein
L3_133_000M1_scaffold_181_25
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25812..26093)
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VVR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05911.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_133_000M1_scaffold_181_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26234..26854)
DNA (621bp) protein (207aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EDS09836.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EDS09836.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
RNA polymerase factor sigma-70 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEQ3_9FIRM
ECF subfamily RNA polymerase sigma-24 subunit
L3_133_000M1_scaffold_181_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27562..27783)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NQH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10619.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_133_000M1_scaffold_181_28
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27826..29562)
DNA (1737bp) protein (579aa)
Phosphomannomutase (EC:5.4.2.8 5.4.2.2)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MMT6_9FIRM
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II {ECO:0000313|EMBL:CCY92803.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_133_000M1_scaffold_181_29
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29919..31448
DNA (1530bp) protein (510aa)
Mg chelatase-like protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXJ5_9FIRM
yifB; putative protein YifB
Uncharacterized protein {ECO:0000313|EMBL:CDZ24059.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_133_000M1_scaffold_181_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31457..32290)
DNA (834bp) protein (278aa)
rrmA; ribosomal RNA large subunit methyltransferase A (EC:2.1.1.51)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTD5_9FIRM
50S rRNA methyltransferase {ECO:0000313|EMBL:KJF39703.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Displaying items 1-30 of 64 in total

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