ggKbase home page

L3_133_000M1_scaffold_233

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_233_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..266
DNA (264bp) protein (88aa)
UPI0003D60969 related cluster n=1 Tax=unknown RepID=UPI0003D60969
Stage 0 DNA-binding protein {ECO:0000313|EMBL:ETI82234.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative transcriptional regulators
L3_133_000M1_scaffold_233_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(313..1275)
DNA (963bp) protein (321aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
UPI0003D68803 related cluster n=1 Tax=unknown RepID=UPI0003D68803
L3_133_000M1_scaffold_233_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1268..2539)
DNA (1272bp) protein (424aa)
UPI0003D60CA6 related cluster n=1 Tax=unknown RepID=UPI0003D60CA6
Uncharacterized protein {ECO:0000313|EMBL:ETI82232.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
GntR family transcriptional regulator
L3_133_000M1_scaffold_233_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2638..3498)
DNA (861bp) protein (287aa)
UPI0003D61333 related cluster n=1 Tax=unknown RepID=UPI0003D61333
Integral membrane cytochrome biogenesis protein {ECO:0000313|EMBL:ETI82231.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
thiol-disulfide oxidoreductase
L3_133_000M1_scaffold_233_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3498..4325)
DNA (828bp) protein (276aa)
UPI0003D64A88 related cluster n=1 Tax=unknown RepID=UPI0003D64A88
Uncharacterized protein {ECO:0000313|EMBL:ETI82230.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative DSBA oxidoreductase
L3_133_000M1_scaffold_233_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4387..6954)
DNA (2568bp) protein (856aa)
UPI0003D59FC3 related cluster n=1 Tax=unknown RepID=UPI0003D59FC3
Uncharacterized protein {ECO:0000313|EMBL:ETI82229.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7087..7746
DNA (660bp) protein (220aa)
UPI0003D67D88 related cluster n=1 Tax=unknown RepID=UPI0003D67D88
DedA family protein {ECO:0000313|EMBL:ETI82228.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DedA family protein
L3_133_000M1_scaffold_233_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7778..8053)
DNA (276bp) protein (92aa)
UPI0003D5EF80 related cluster n=1 Tax=unknown RepID=UPI0003D5EF80
COP associated protein {ECO:0000313|EMBL:ETI82227.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8231..9577)
DNA (1347bp) protein (449aa)
UPI0003D5E32B related cluster n=1 Tax=unknown RepID=UPI0003D5E32B
Uncharacterized protein {ECO:0000313|EMBL:ETI82226.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9807..11252)
DNA (1446bp) protein (482aa)
adenylosuccinate lyase (EC:4.3.2.2)
UPI0003D6809D related cluster n=1 Tax=unknown RepID=UPI0003D6809D
Uncharacterized protein {ECO:0000313|EMBL:ETI82225.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11444..12499
DNA (1056bp) protein (352aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D6426A related cluster n=1 Tax=unknown RepID=UPI0003D6426A
histidinol-phosphate aminotransferase
L3_133_000M1_scaffold_233_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12542..13258)
DNA (717bp) protein (239aa)
UPI0003D66765 related cluster n=1 Tax=unknown RepID=UPI0003D66765
Uncharacterized protein {ECO:0000313|EMBL:ETI82223.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13259..14719)
DNA (1461bp) protein (487aa)
UPI0003D66D4A related cluster n=1 Tax=unknown RepID=UPI0003D66D4A
Uncharacterized protein {ECO:0000313|EMBL:ETI82222.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14877..16355)
DNA (1479bp) protein (493aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glutamate-1-semialdehyde aminotransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B59D37
glutamate-1-semialdehyde-2,1-aminomutase
L3_133_000M1_scaffold_233_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16657..17061
DNA (405bp) protein (135aa)
UPI0003D5D5F7 related cluster n=1 Tax=unknown RepID=UPI0003D5D5F7
Uncharacterized protein {ECO:0000313|EMBL:ETI82219.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17058..17438
DNA (381bp) protein (127aa)
UPI0003D636FA related cluster n=1 Tax=unknown RepID=UPI0003D636FA
Uncharacterized protein {ECO:0000313|EMBL:ETI82218.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pilus assembly protein TadE
L3_133_000M1_scaffold_233_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17448..19892)
DNA (2445bp) protein (815aa)
DEAD/DEAH box helicase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3D63E
Uncharacterized protein {ECO:0000313|EMBL:ETI82216.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19993..20907
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B5FCFE
Uncharacterized protein {ECO:0000313|EMBL:ETI82214.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21158..22981
DNA (1824bp) protein (608aa)
nrdD; anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
UPI0003D5AE41 related cluster n=1 Tax=unknown RepID=UPI0003D5AE41
Uncharacterized protein {ECO:0000313|EMBL:ETI82213.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_233_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22974..23720
DNA (747bp) protein (249aa)
UPI0003D6830A related cluster n=1 Tax=unknown RepID=UPI0003D6830A
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:ETI82212.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein
L3_133_000M1_scaffold_233_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23873..25276
DNA (1404bp) protein (468aa)
UPI0003D60D3E related cluster n=1 Tax=unknown RepID=UPI0003D60D3E
Uncharacterized protein {ECO:0000313|EMBL:ETI82211.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25457..28186)
DNA (2730bp) protein (910aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA topoisomerase I (EC:5.99.1.2)
UPI0003D5DCDA related cluster n=1 Tax=unknown RepID=UPI0003D5DCDA
L3_133_000M1_scaffold_233_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28874..30640
DNA (1767bp) protein (589aa)
UPI0003D5ED34 related cluster n=1 Tax=unknown RepID=UPI0003D5ED34
Uncharacterized protein {ECO:0000313|EMBL:ETI82209.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_24
Actinomyces turicensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30997..34320
DNA (3324bp) protein (1108aa)
Uncharacterized protein n=1 Tax=Actinomyces turicensis ACS-279-V-Col4 RepID=K0YV35_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EJZ87742.1}; TaxID=883077 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces turicensis ACS-279-V-Col4.;"
hypothetical protein
L3_133_000M1_scaffold_233_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34573..35706)
DNA (1134bp) protein (378aa)
UPI0003D5A7D8 related cluster n=1 Tax=unknown RepID=UPI0003D5A7D8
Uncharacterized protein {ECO:0000313|EMBL:ETI82206.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative sugar ABC transport syste ATP-binding protein
L3_133_000M1_scaffold_233_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36042..36776)
DNA (735bp) protein (245aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
gpmA; phosphoglycerate mutase (EC:5.4.2.1)
UPI0003D5D9CE related cluster n=1 Tax=unknown RepID=UPI0003D5D9CE
L3_133_000M1_scaffold_233_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36830..37153)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3CA3B
Lsr2 family protein {ECO:0000313|EMBL:ETI82204.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_233_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37392..38606)
DNA (1215bp) protein (405aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5FD66 related cluster n=1 Tax=unknown RepID=UPI0003D5FD66
purT; phosphoribosylglycinamide formyltransferase 2
L3_133_000M1_scaffold_233_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39504..41006
DNA (1503bp) protein (501aa)
UPI0003D5F03D related cluster n=1 Tax=unknown RepID=UPI0003D5F03D
Uncharacterized protein {ECO:0000313|EMBL:ETI82202.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter substrate-binding protein
L3_133_000M1_scaffold_233_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41008..41970
DNA (963bp) protein (321aa)
UPI0003D60AF4 related cluster n=1 Tax=unknown RepID=UPI0003D60AF4
Uncharacterized protein {ECO:0000313|EMBL:ETI82201.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter permease
Displaying items 1-30 of 44 in total

View Taxonomy