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L3_133_000M1_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_252_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

59..2425
DNA (2367bp) protein (789aa)
UvrABC system protein C n=5 Tax=Bifidobacterium RepID=F8AQ69_BIFLN
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
uvrC; excinuclease ABC subunit C
L3_133_000M1_scaffold_252_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2534..3505
DNA (972bp) protein (324aa)
Shikimate dehydrogenase substrate binding, N-terminal domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUH4_BIFLJ
shikimate dehydrogenase
Shikimate dehydrogenase substrate binding, N-terminal domain protein {ECO:0000313|EMBL:ADH00530.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_252_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3505..4491
DNA (987bp) protein (329aa)
UPF0042 nucleotide-binding protein Blon_1085/BLIJ_1109 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=Y1085_BIFLS
hypothetical protein
Nucleotide-binding protein BLIC_a01153 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
L3_133_000M1_scaffold_252_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4690..5640
DNA (951bp) protein (317aa)
Putative sporulation transcription regulator WhiA n=16 Tax=Bifidobacterium RepID=WHIA_BIFLD
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_133_000M1_scaffold_252_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5809..7014
DNA (1206bp) protein (402aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Phosphoglycerate kinase n=8 Tax=Bifidobacterium RepID=E8MJ18_BIFL2
phosphoglycerate kinase
L3_133_000M1_scaffold_252_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7070..7873
DNA (804bp) protein (268aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Triosephosphate isomerase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUH0_BIFLJ
triosephosphate isomerase
L3_133_000M1_scaffold_252_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7937..8185
DNA (249bp) protein (83aa)
Preprotein translocase subunit n=20 Tax=Bifidobacterium RepID=B3DRW1_BIFLD
Protein translocase subunit secG
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KEY22608.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_133_000M1_scaffold_252_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8287..9237
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L-lactate dehydrogenase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUG8_BIFLJ
L-lactate dehydrogenase
L3_133_000M1_scaffold_252_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9234..10085
DNA (852bp) protein (284aa)
Haloacid dehalogenase domain protein hydrolase, type 3 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUG7_BIFLJ
HAD family hydrolase
Haloacid dehalogenase domain protein hydrolase, type 3 {ECO:0000313|EMBL:ADH00523.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_252_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10196..11752
DNA (1557bp) protein (519aa)
Aminotransferase, class I and II n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUG6_BIFLJ
Aminotransferase, class I and II {ECO:0000313|EMBL:ADH00522.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
class I and II aminotransferase
L3_133_000M1_scaffold_252_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11756..13114
DNA (1359bp) protein (453aa)
Na+ driven multidrug efflux pump n=1 Tax=Bifidobacterium longum E18 RepID=V6XYU7_BIFLN
MATE efflux family protein {ECO:0000313|EMBL:KFI68051.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
MATE efflux family protein
L3_133_000M1_scaffold_252_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13760..15097)
DNA (1338bp) protein (446aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUG4_BIFLJ
branched-chain amino acid transport system II carrier protein
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:ADH00520.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_133_000M1_scaffold_252_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15226..16329)
DNA (1104bp) protein (368aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Transaldolase n=7 Tax=Bifidobacterium RepID=D6ZUG3_BIFLJ
Transaldolase
L3_133_000M1_scaffold_252_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16502..18610)
DNA (2109bp) protein (703aa)
Transketolase n=4 Tax=Bifidobacterium longum RepID=B3DRW9_BIFLD
Transketolase {ECO:0000313|EMBL:KHD94771.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
tktA; transketolase
L3_133_000M1_scaffold_252_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18985..20103
DNA (1119bp) protein (373aa)
Heat-inducible transcription repressor hrcA n=7 Tax=Bifidobacterium longum RepID=D6ZUG1_BIFLJ
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_133_000M1_scaffold_252_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20159..21304
DNA (1146bp) protein (382aa)
Chaperone protein DnaJ n=4 Tax=Bifidobacterium longum RepID=D6ZUG0_BIFLJ
chaperone protein
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_133_000M1_scaffold_252_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21350..22141)
DNA (792bp) protein (264aa)
Fructosamine-3-kinase n=10 Tax=Bifidobacterium RepID=B3DRX2_BIFLD
fructosamine-3-kinase
Fructosamine kinase {ECO:0000313|EMBL:AIW43801.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_133_000M1_scaffold_252_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22286..23170
DNA (885bp) protein (295aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CBK70485.1}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CBK70485.1};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Undecaprenyl-diphosphatase n=13 Tax=Bifidobacterium RepID=UPPP_BIFLD
undecaprenyl-diphosphatase
L3_133_000M1_scaffold_252_19
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23326..24159)
DNA (834bp) protein (278aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=Q8G6C3_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95624.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_133_000M1_scaffold_252_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24979..27012
DNA (2034bp) protein (678aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Threonine--tRNA ligase n=10 Tax=Bifidobacterium RepID=SYT_BIFLO
thrS; threonyl-tRNA synthetase
L3_133_000M1_scaffold_252_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27152..27736
DNA (585bp) protein (195aa)
Uncharacterized protein n=11 Tax=Bifidobacterium RepID=Q8G6C1_BIFLO
HIT family hydrolase
HIT family hydrolase {ECO:0000313|EMBL:AIW43797.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_133_000M1_scaffold_252_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27875..28630
DNA (756bp) protein (252aa)
Probable transcriptional regulatory protein BLD_0450 n=14 Tax=Bifidobacterium RepID=Y450_BIFLD
hypothetical protein
Probable transcriptional regulatory protein BN57_1200 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_133_000M1_scaffold_252_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28636..29220
DNA (585bp) protein (195aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Crossover junction endodeoxyribonuclease RuvC n=9 Tax=Bifidobacterium RepID=RUVC_BIFLD
ruvC; Holliday junction resolvase
L3_133_000M1_scaffold_252_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29278..29904
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Holliday junction ATP-dependent DNA helicase RuvA n=9 Tax=Bifidobacterium RepID=RUVA_BIFLD
Holliday junction DNA helicase RuvA
L3_133_000M1_scaffold_252_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29904..30968
DNA (1065bp) protein (355aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Holliday junction ATP-dependent DNA helicase RuvB n=5 Tax=Bifidobacterium RepID=RUVB_BIFLO
L3_133_000M1_scaffold_252_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31033..31467
DNA (435bp) protein (145aa)
Preprotein translocase subunit n=14 Tax=Bifidobacterium RepID=B3DRY1_BIFLD
hypothetical protein
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EEI80111.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_133_000M1_scaffold_252_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31531..32112
DNA (582bp) protein (194aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Adenine phosphoribosyltransferase n=17 Tax=Bifidobacterium RepID=APT_BIFLD
adenine phosphoribosyltransferase
L3_133_000M1_scaffold_252_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32209..33411
DNA (1203bp) protein (401aa)
Succinyl-CoA synthetase beta subunit n=18 Tax=Bifidobacterium RepID=B3DRY3_BIFLD
succinyl-CoA synthase beta subunit
Succinyl-CoA synthetase beta chain {ECO:0000313|EMBL:AAN24549.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_133_000M1_scaffold_252_29
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33411..34322
DNA (912bp) protein (304aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=17 Tax=Bifidobacterium RepID=B3DRY4_BIFLD
succinyl-CoA synthase subunit alpha
L3_133_000M1_scaffold_252_30
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34342..35721
DNA (1380bp) protein (460aa)
Bifunctional purine biosynthesis protein purH n=2 Tax=Bifidobacterium RepID=E5Y062_9BIFI
Bifunctional purine biosynthesis protein purH {ECO:0000313|EMBL:EFV36740.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
hypothetical protein
Displaying items 1-30 of 50 in total

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