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L3_133_000M1_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_257_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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603..1178
DNA (576bp) protein (192aa)
RNA polymerase sigma-70 factor, expansion family 1 n=4 Tax=Parabacteroides RepID=K5Y6C3_9PORP
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN08727.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase sigma-70 factor
L3_133_000M1_scaffold_257_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1309..2235
DNA (927bp) protein (309aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B3W1_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD13871.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L3_133_000M1_scaffold_257_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2347..5694
DNA (3348bp) protein (1116aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y612_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13872.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5703..7553
DNA (1851bp) protein (617aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRA4_9PORP
SusD family protein {ECO:0000313|EMBL:CDD13873.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7600..8271
DNA (672bp) protein (224aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5ZZ74_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13874.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8334..9473
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A7ADL7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13875.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9485..12175
DNA (2691bp) protein (897aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBX3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13876.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Mannosylglycoprotein endo-beta-mannosidase
L3_133_000M1_scaffold_257_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12190..12588
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADL9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87161.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Fic family protein
L3_133_000M1_scaffold_257_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12624..13715
DNA (1092bp) protein (364aa)
Ser/Thr phosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRA9_9PORP
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDD13878.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metallophosphatase
L3_133_000M1_scaffold_257_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13725..14852
DNA (1128bp) protein (376aa)
Ser/Thr phosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X418_9PORP
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDD13879.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphoesterase
L3_133_000M1_scaffold_257_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14849..15988)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WX12_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13880.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16008..17699)
DNA (1692bp) protein (564aa)
Peptidase S41 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBY0_9PORP
Peptidase S41 family {ECO:0000313|EMBL:CDD13881.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
carboxy-terminal processing protease
L3_133_000M1_scaffold_257_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17747..18724)
DNA (978bp) protein (326aa)
Kinase PfkB family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y623_9PORP
Kinase PfkB family {ECO:0000313|EMBL:CDD13882.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
PfkB family carbohydrate kinase
L3_133_000M1_scaffold_257_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19111..19869
DNA (759bp) protein (253aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=4 Tax=Parabacteroides RepID=A7ADM5_9PORP
L3_133_000M1_scaffold_257_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19901..21010
DNA (1110bp) protein (370aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6BPM3_9PORP
ATP-binding protein Mrp/Nbp35 family {ECO:0000313|EMBL:CDD13884.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Mrp/Nbp35 family ATP-binding protein
L3_133_000M1_scaffold_257_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21141..22631)
DNA (1491bp) protein (497aa)
Histidine ammonia-lyase {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026}; EC=4.3.1.3 {ECO:0000256|RuleBase:RU004479, ECO:0000256|SAAS:SAAS00083026};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Histidine ammonia-lyase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WX17_9PORP
histidine ammonia-lyase
L3_133_000M1_scaffold_257_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22644..23279)
DNA (636bp) protein (212aa)
Formiminotransferase-cyclodeaminase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBY5_9PORP
Formiminotransferase-cyclodeaminase {ECO:0000313|EMBL:CDD13886.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
formiminotransferase-cyclodeaminase
L3_133_000M1_scaffold_257_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23321..24571)
DNA (1251bp) protein (417aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Imidazolonepropionase n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B1Z2_9PORP
imidazolonepropionase
L3_133_000M1_scaffold_257_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24575..25459)
DNA (885bp) protein (295aa)
Glutamate formimidoyltransferase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADN1_9PORP
Glutamate formimidoyltransferase {ECO:0000313|EMBL:EDN87173.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
formiminotransferase-cyclodeaminase
L3_133_000M1_scaffold_257_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25477..27480)
DNA (2004bp) protein (668aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WLQ9_9PORP
L3_133_000M1_scaffold_257_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27656..30670)
DNA (3015bp) protein (1005aa)
Export membrane protein SecD n=3 Tax=Parabacteroides RepID=A7ADN3_9PORP
Export membrane protein SecD {ECO:0000313|EMBL:EDN87175.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
bifunctional preprotein translocase subunit SecD/SecF
L3_133_000M1_scaffold_257_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30835..31836
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X739_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12086.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31841..32392
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WLS0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12088.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32478..33599)
DNA (1122bp) protein (374aa)
Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRU2_9PORP
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:CDD12090.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_257_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33596..34474)
DNA (879bp) protein (293aa)
Peptidase S54 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X743_9PORP
Peptidase S54 family {ECO:0000313|EMBL:CDD12091.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rhomboid family protein
L3_133_000M1_scaffold_257_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34455..35243)
DNA (789bp) protein (263aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K6AQ07_9PORP
Peptidase, S54 family {ECO:0000313|EMBL:EDN87180.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rhomboid family protein
L3_133_000M1_scaffold_257_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35352..35624
DNA (273bp) protein (91aa)
DNA-binding protein HU n=3 Tax=Parabacteroides merdae RepID=A7ADN9_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN87181.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-binding protein HU-beta
L3_133_000M1_scaffold_257_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


35807..37600
DNA (1794bp) protein (598aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=Parabacteroides RepID=K5ZCD5_9PORP
L3_133_000M1_scaffold_257_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37618..38382
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Z051_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12095.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyl transferase, group 2 family protein
L3_133_000M1_scaffold_257_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38318..38584)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X745_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12096.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Displaying items 1-30 of 50 in total

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