ggKbase home page

L3_133_000M1_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_334_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

180..809
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60307.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_133_000M1_scaffold_334_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(930..1775)
DNA (846bp) protein (282aa)
UPI0003D5E475 related cluster n=1 Tax=unknown RepID=UPI0003D5E475
Uncharacterized protein {ECO:0000313|EMBL:ETI81921.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
arginine ABC transporter ATP-binding protein
L3_133_000M1_scaffold_334_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1772..2728)
DNA (957bp) protein (319aa)
UPI0003D5FD9C related cluster n=1 Tax=unknown RepID=UPI0003D5FD9C
Uncharacterized protein {ECO:0000313|EMBL:ETI81920.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
polar amino acid ABC transporter permease
L3_133_000M1_scaffold_334_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2753..3670)
DNA (918bp) protein (306aa)
ABC transporter substrate-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B6B507
ABC-type amino acid transport system, secreted component {ECO:0000313|EMBL:ETI81919.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter substrate-binding protein
L3_133_000M1_scaffold_334_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3748..6162
DNA (2415bp) protein (805aa)
UPI0003D5D42D related cluster n=1 Tax=unknown RepID=UPI0003D5D42D
Uncharacterized protein {ECO:0000313|EMBL:ETI81918.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6675..6845
DNA (171bp) protein (57aa)
UPI0003D5C78F related cluster n=1 Tax=unknown RepID=UPI0003D5C78F
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpmG; 50S ribosomal protein L33
L3_133_000M1_scaffold_334_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7117..8007)
DNA (891bp) protein (297aa)
UPI0003D60CD9 related cluster n=1 Tax=unknown RepID=UPI0003D60CD9
Uncharacterized protein {ECO:0000313|EMBL:ETI81916.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
myo-inositol catabolism protein
L3_133_000M1_scaffold_334_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8150..9142)
DNA (993bp) protein (331aa)
iolG1; myo-inositol 2-dehydrogenase (EC:1.1.1.18)
UPI0003D5F646 related cluster n=1 Tax=unknown RepID=UPI0003D5F646
Uncharacterized protein {ECO:0000313|EMBL:ETI81915.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_334_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9376..9645)
DNA (270bp) protein (90aa)
UPI0003D65CB7 related cluster n=1 Tax=unknown RepID=UPI0003D65CB7
Cell division protein CrgA {ECO:0000256|HAMAP-Rule:MF_00631}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9798..10550
DNA (753bp) protein (251aa)
UPI0003D640A1 related cluster n=1 Tax=unknown RepID=UPI0003D640A1
Sortase family protein {ECO:0000313|EMBL:ETI81913.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
sortase family protein
L3_133_000M1_scaffold_334_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10538..10732
DNA (195bp) protein (65aa)
UPI0003D5E2CC related cluster n=1 Tax=unknown RepID=UPI0003D5E2CC
Uncharacterized protein {ECO:0000313|EMBL:ETI81912.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10798..12621)
DNA (1824bp) protein (608aa)
pknB; putative non-specific serine/threonine protein kinase (EC:2.7.11.1)
UPI0003D60689 related cluster n=1 Tax=unknown RepID=UPI0003D60689
Uncharacterized protein {ECO:0000313|EMBL:ETI81911.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_334_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12597..14534)
DNA (1938bp) protein (646aa)
serine/threonine-protein kinase n=1 Tax=Varibaculum cambriense RepID=UPI0003B74996
Uncharacterized protein {ECO:0000313|EMBL:ETI81909.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
serine/threonine protein kinase
L3_133_000M1_scaffold_334_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14527..15999)
DNA (1473bp) protein (491aa)
peptidase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3F76E
Penicillin binding protein transpeptidase protein {ECO:0000313|EMBL:ETI81907.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
cell elongation-specific peptidoglycan D,D-transpeptidase
L3_133_000M1_scaffold_334_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15983..17557)
DNA (1575bp) protein (525aa)
UPI0003D5A92A related cluster n=1 Tax=unknown RepID=UPI0003D5A92A
Uncharacterized protein {ECO:0000313|EMBL:ETI81906.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
cell cycle protein
L3_133_000M1_scaffold_334_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17628..18818)
DNA (1191bp) protein (397aa)
UPI0003D5DE9E related cluster n=1 Tax=unknown RepID=UPI0003D5DE9E
Uncharacterized protein {ECO:0000313|EMBL:ETI81905.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphoprotein phosphatase
L3_133_000M1_scaffold_334_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18815..19306)
DNA (492bp) protein (164aa)
UPI0003D61BEF related cluster n=1 Tax=unknown RepID=UPI0003D61BEF
FHA protein {ECO:0000313|EMBL:ETI81904.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
FHA domain-containing protein
L3_133_000M1_scaffold_334_18
Actinomyces neuii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19319..20014)
DNA (696bp) protein (232aa)
signal peptide protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3BB59
Uncharacterized protein {ECO:0000313|EMBL:EJZ86852.1}; TaxID=888439 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces neuii BVS029A5.;"
FHA domain-containing protein
L3_133_000M1_scaffold_334_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20449..20943)
DNA (495bp) protein (165aa)
UPI0003D686B6 related cluster n=1 Tax=unknown RepID=UPI0003D686B6
Uncharacterized protein {ECO:0000313|EMBL:ETI81896.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21010..22179)
DNA (1170bp) protein (390aa)
UPI0003D61B8A related cluster n=1 Tax=unknown RepID=UPI0003D61B8A
Uncharacterized protein {ECO:0000313|EMBL:ETI81895.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter
L3_133_000M1_scaffold_334_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22166..22909)
DNA (744bp) protein (248aa)
Phosphonate-transporting ATPase {ECO:0000313|EMBL:ETI81894.1}; EC=3.6.3.28 {ECO:0000313|EMBL:ETI81894.1};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphonate-transporting ATPase (EC:3.6.3.28)
UPI0003D5A550 related cluster n=1 Tax=unknown RepID=UPI0003D5A550
L3_133_000M1_scaffold_334_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22910..24103)
DNA (1194bp) protein (398aa)
UPI0003D640BC related cluster n=1 Tax=unknown RepID=UPI0003D640BC
Uncharacterized protein {ECO:0000313|EMBL:ETI81893.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24136..25047)
DNA (912bp) protein (304aa)
UPI0003D59582 related cluster n=1 Tax=unknown RepID=UPI0003D59582
Uncharacterized protein {ECO:0000313|EMBL:ETI81891.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_133_000M1_scaffold_334_24
unknown

Not on your lists

comp(25068..25421)
DNA (354bp) protein (118aa)

This feature has no annotations

L3_133_000M1_scaffold_334_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25634..27082
DNA (1449bp) protein (483aa)
UPI0003D5A47E related cluster n=1 Tax=unknown RepID=UPI0003D5A47E
Uncharacterized protein {ECO:0000313|EMBL:ETI81890.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
NCS2 family nucleobase:cation symporter-2
L3_133_000M1_scaffold_334_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27086..27748)
DNA (663bp) protein (221aa)
UPI0003D5FC11 related cluster n=1 Tax=unknown RepID=UPI0003D5FC11
Uncharacterized protein {ECO:0000313|EMBL:ETI81889.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_133_000M1_scaffold_334_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27855..29537
DNA (1683bp) protein (561aa)
UPI0003D64E56 related cluster n=1 Tax=unknown RepID=UPI0003D64E56
Uncharacterized protein {ECO:0000313|EMBL:ETI81888.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter
L3_133_000M1_scaffold_334_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29534..31414
DNA (1881bp) protein (627aa)
UPI0003D64B8B related cluster n=1 Tax=unknown RepID=UPI0003D64B8B
Uncharacterized protein {ECO:0000313|EMBL:ETI81887.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter ATP-binding protein/permease
L3_133_000M1_scaffold_334_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31731..35219
DNA (3489bp) protein (1163aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpoB; DNA-directed RNA polymerase (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Varibaculum cambriense RepID=UPI0003B57583
L3_133_000M1_scaffold_334_30
Actinomyces neuii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35250..39146
DNA (3897bp) protein (1299aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=888439 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces neuii BVS029A5.;"
rpoC; DNA-directed RNA polymerase (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Varibaculum cambriense RepID=UPI0003B5C092
Displaying items 1-30 of 37 in total

View Taxonomy