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L3_133_000M1_scaffold_356

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_356_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(188..517)
DNA (330bp) protein (110aa)
Cupin domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CRF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22410.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_133_000M1_scaffold_356_2
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(660..1904)
DNA (1245bp) protein (415aa)
CoA-substrate-specific enzyme activase, putative n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LT72_9FIRM
CoA-substrate-specific enzyme activase, putative
CoA-substrate-specific enzyme activase, putative {ECO:0000313|EMBL:CBL23980.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_133_000M1_scaffold_356_3
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1910..2245)
DNA (336bp) protein (112aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWV9_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EDM85840.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
RNA polymerase sigma factor, sigma-70 family
L3_133_000M1_scaffold_356_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2694..5210)
DNA (2517bp) protein (839aa)
Efflux ABC transporter, permease protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QRT8_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERK44003.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
efflux ABC transporter permease
L3_133_000M1_scaffold_356_5
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5507..5689
DNA (183bp) protein (61aa)
Toxin-antitoxin system, toxin component, HicA family n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDI8_CLOSV
Toxin-antitoxin system, toxin component, HicA family {ECO:0000313|EMBL:EDS07417.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_133_000M1_scaffold_356_6
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5723..6124
DNA (402bp) protein (134aa)
Toxin-antitoxin system, antitoxin component, HicB family n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDI7_CLOSV
Toxin-antitoxin system, antitoxin component, HicB family {ECO:0000313|EMBL:EDS07416.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Uncharacterised protein family (UPF0150).
L3_133_000M1_scaffold_356_7
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6189..6842)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FUB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB12999.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L3_133_000M1_scaffold_356_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6854..7660)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I4Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31861.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L3_133_000M1_scaffold_356_9
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7657..8019)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:471 RepID=R7EB26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD99498.1}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
L3_133_000M1_scaffold_356_10

Not on your lists

comp(8012..8377)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SRV6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC63387.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_133_000M1_scaffold_356_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8374..8727)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJE8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EDS07411.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_133_000M1_scaffold_356_12
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8779..9084)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDI1_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07410.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_133_000M1_scaffold_356_13
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9074..9319)
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B0NDI0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07409.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_133_000M1_scaffold_356_14
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9316..9468)
DNA (153bp) protein (51aa)
XkdX family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJE5_CLOSY
XkdX family protein {ECO:0000313|EMBL:EDS07408.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_133_000M1_scaffold_356_15
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9470..9658)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDH8_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07407.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_133_000M1_scaffold_356_16

Not on your lists

comp(9705..11090)
DNA (1386bp) protein (462aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BVE9_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75794.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
hypothetical protein
L3_133_000M1_scaffold_356_17

Not on your lists

comp(11456..12751)
DNA (1296bp) protein (432aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RTR8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC46799.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_133_000M1_scaffold_356_18
unknown

Not on your lists

comp(12755..13186)
DNA (432bp) protein (144aa)

This feature has no annotations

L3_133_000M1_scaffold_356_19
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13277..14338)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM87540.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein predicted by Glimmer/Critica
L3_133_000M1_scaffold_356_20
unknown

Not on your lists

comp(14367..14660)
DNA (294bp) protein (98aa)

This feature has no annotations

L3_133_000M1_scaffold_356_21
unknown

Not on your lists

comp(14663..14893)
DNA (231bp) protein (77aa)

This feature has no annotations

L3_133_000M1_scaffold_356_22
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14910..17180)
DNA (2271bp) protein (757aa)
Phage minor structural protein N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GRC5_9FIRM
Phage minor structural protein N-terminal domain protein {ECO:0000313|EMBL:CDE29606.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
KID repeat family protein
L3_133_000M1_scaffold_356_23
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17193..17891)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM87543.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_133_000M1_scaffold_356_24

Not on your lists

comp(17901..21266)
DNA (3366bp) protein (1122aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BVF3_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75798.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
phage tail tape measure protein, TP901 family
L3_133_000M1_scaffold_356_25

Not on your lists

comp(21283..21810)
DNA (528bp) protein (176aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1S1C1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC49144.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_133_000M1_scaffold_356_26
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21807..22124)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDG9_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07398.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L3_133_000M1_scaffold_356_27
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22154..22789)
DNA (636bp) protein (212aa)
Phage major tail protein, phi13 family n=2 Tax=Clostridium RepID=B0NDG8_CLOSV
Phage major tail protein, phi13 family {ECO:0000313|EMBL:EDS07397.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_133_000M1_scaffold_356_28
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22792..23154)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDG7_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07396.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein DUF3168
L3_133_000M1_scaffold_356_29
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23164..23613)
DNA (450bp) protein (150aa)
Phage protein, HK97 gp10 family n=2 Tax=Clostridium RepID=B0NDG6_CLOSV
Phage protein, HK97 gp10 family {ECO:0000313|EMBL:EDS07395.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_133_000M1_scaffold_356_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23643..23960)
DNA (318bp) protein (106aa)
Putative phage head-tail adaptor n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJD2_CLOSY
Putative phage head-tail adaptor {ECO:0000313|EMBL:EDS07394.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
Displaying items 1-30 of 64 in total

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