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L3_133_000M1_scaffold_390

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_133_000M1_scaffold_390_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

253..846
DNA (594bp) protein (198aa)
DNA-3-methyladenine glycosylase I n=2 Tax=Parabacteroides RepID=K6B0Z8_9PORP
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:CDD14960.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA-3-methyladenine glycosylase I
L3_133_000M1_scaffold_390_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1101..1289
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B0A4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14959.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1336..1800
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZR94_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14958.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cold shock DNA-binding protein
L3_133_000M1_scaffold_390_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1892..3007)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZCZ8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13544.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
glycosyl hydrolase family protein
L3_133_000M1_scaffold_390_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3070..4785)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZJ09_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14956.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4805..8191)
DNA (3387bp) protein (1129aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides RepID=K5YDB0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14955.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane protein
L3_133_000M1_scaffold_390_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8353..9513)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6A711_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14954.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9573..10127)
DNA (555bp) protein (185aa)
Sigma-70 family RNA polymerase sigma factor n=3 Tax=Parabacteroides RepID=K5Z7A9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14953.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
sigma-70 family RNA polymerase sigma factor
L3_133_000M1_scaffold_390_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10176..10847)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y968_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14952.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11035..11634
DNA (600bp) protein (200aa)
Putative membrane protein, MarC family n=2 Tax=Parabacteroides RepID=A7AJG2_9PORP
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Multiple antibiotic transporter
L3_133_000M1_scaffold_390_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11643..12497)
DNA (855bp) protein (285aa)
Peptidase M23 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X072_9PORP
Peptidase M23 family {ECO:0000313|EMBL:CDD14950.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metalloendopeptidase
L3_133_000M1_scaffold_390_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12627..13799)
DNA (1173bp) protein (391aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=3 Tax=Parabacteroides RepID=K6A716_9PORP
L3_133_000M1_scaffold_390_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13824..14636)
DNA (813bp) protein (271aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=4 Tax=Parabacteroides RepID=A7AJG5_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD14948.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
short-chain dehydrogenase/reductase sdr
L3_133_000M1_scaffold_390_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14769..15788)
DNA (1020bp) protein (340aa)
Transcriptional regulator LacI family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y963_9PORP
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDD14947.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator catabolite control protein A
L3_133_000M1_scaffold_390_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15893..16531)
DNA (639bp) protein (213aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZJ18_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14946.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16910..18121
DNA (1212bp) protein (404aa)
Efflux transporter, RND family, MFP subunit n=3 Tax=Parabacteroides RepID=K5YDB8_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKN11477.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
AcrA/AcrE family multidrug resistance protein
L3_133_000M1_scaffold_390_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18154..21372
DNA (3219bp) protein (1073aa)
RND transporter HAE1 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUD7_9PORP
RND transporter HAE1 family {ECO:0000313|EMBL:CDD14943.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
L3_133_000M1_scaffold_390_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21376..22767
DNA (1392bp) protein (464aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=2 Tax=Parabacteroides merdae RepID=A7AJH0_9PORP
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EDN85139.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein oprM
L3_133_000M1_scaffold_390_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22799..23566
DNA (768bp) protein (256aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosami ne O-acyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XF39_9PORP
UDP-N-acetylglucosamine acetyltransferase
L3_133_000M1_scaffold_390_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23680..24420
DNA (741bp) protein (247aa)
Uncharacterized protein n=5 Tax=Parabacteroides RepID=B7BDB4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14940.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24883..25824)
DNA (942bp) protein (314aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Malate dehydrogenase n=4 Tax=Parabacteroides RepID=A7AJH5_9PORP
malate dehydrogenase
L3_133_000M1_scaffold_390_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26016..27200)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AJH6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85145.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_133_000M1_scaffold_390_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27201..27782)
DNA (582bp) protein (194aa)
3'-5' exonuclease n=3 Tax=Parabacteroides RepID=A7AJH7_9PORP
3'-5' exonuclease {ECO:0000313|EMBL:EDN85146.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_133_000M1_scaffold_390_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27779..28324)
DNA (546bp) protein (182aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AJH8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14936.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28330..28491)
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6ANC5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14935.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_133_000M1_scaffold_390_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28518..31016
DNA (2499bp) protein (833aa)
FtsK/SpoIIIE family protein n=3 Tax=Parabacteroides RepID=A7AJH9_9PORP
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CDD14934.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
FtsK/SpoIIIE family cell division protein
L3_133_000M1_scaffold_390_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31133..31801
DNA (669bp) protein (223aa)
Outer membrane lipoprotein carrier protein LolA n=3 Tax=Parabacteroides RepID=A7AJI0_9PORP
Outer membrane lipoprotein carrier protein LolA {ECO:0000313|EMBL:CDD14933.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_133_000M1_scaffold_390_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31881..32834
DNA (954bp) protein (318aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Thioredoxin reductase n=3 Tax=Parabacteroides RepID=A7AJI1_9PORP
thioredoxin reductase
L3_133_000M1_scaffold_390_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32859..33635
DNA (777bp) protein (259aa)
Glycerophosphodiester phosphodiesterase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XF29_9PORP
Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:CDD14931.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycerophosphodiester phosphodiesterase
L3_133_000M1_scaffold_390_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33649..35127
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X050_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14930.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 49 in total

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